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08E140C01_z5_2013_Ig3399_v2_scaffold_1972

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_1972_1
Draconibacterium sp. JN14CK-3, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3..671
DNA (669bp) protein (223aa)
oxidoreductase n=1 Tax=Thermophagus xiamenensis RepID=UPI000255D671
Uncharacterized protein {ECO:0000313|EMBL:KJF43070.1}; TaxID=1544798 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium sp. JN14CK-3.;"
2-polyprenylphenol 6-hydroxylase; K05784 benzoate/toluate 1,2-dioxygenase electron transfer component
08E140C01_z5_2013_Ig3399_v2_scaffold_1972_2
unknown

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763..1299
DNA (537bp) protein (179aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1972_3
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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1559..2101
DNA (543bp) protein (181aa)
DNA-directed RNA polymerase specialized sigma subunit n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JLF6_9BACT
DNA-directed RNA polymerase specialized sigma subunit {ECO:0000313|EMBL:ELR69088.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
08E140C01_z5_2013_Ig3399_v2_scaffold_1972_4
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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2113..2928
DNA (816bp) protein (272aa)
Uncharacterized protein {ECO:0000313|EMBL:EZH74957.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
transmembrane anti-sigma factor id=24487173 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Hymenobacter norwichensis genus=Hymenobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
transmembrane anti-sigma factor
08E140C01_z5_2013_Ig3399_v2_scaffold_1972_5

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3005..3805
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000376BE4A
Marine sediment metagenome DNA, contig: S01H1_S02711 {ECO:0000313|EMBL:GAF98215.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1972_6

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3926..4627
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003756CE6
Marine sediment metagenome DNA, contig: S01H1_S05193 {ECO:0000313|EMBL:GAF96688.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1972_7
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

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4688..7027
DNA (2340bp) protein (780aa)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI00037F363B
hypothetical protein Tax=GWD2_Bacteroidetes_33_33_curated
antimicrobial peptide ABC transporter permease rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1972_8
unknown

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comp(7150..7326)
DNA (177bp) protein (59aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1972_9
RBG_13_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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7500..9854
DNA (2355bp) protein (785aa)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI00037F363B rbh
hypothetical protein Tax=RBG_13_Ignavibacteria_36_8_curated
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1972_10
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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9916..10602
DNA (687bp) protein (229aa)
ABC transporter related id=1739552 bin=GWE2_Bacteroidetes_42_24 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein rbh
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_1972_11
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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10889..11449
DNA (561bp) protein (187aa)
DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZGP7_9BACT
DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein {ECO:0000313|EMBL:EAY30664.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
08E140C01_z5_2013_Ig3399_v2_scaffold_1972_12
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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11446..12249
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI0003671ADA
anti-ECFsigma factor, ChrR Tax=RBG_16_Planctomycetes_55_9_curated
HEAT domain containing protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1972_13
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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12254..13138
DNA (885bp) protein (295aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W516_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT92376.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1972_14
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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13157..13966
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GDE7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCH51921.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1972_15
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(14014..14748)
DNA (735bp) protein (245aa)
LytTR family two component transcriptional regulator Tax=GWF2_Bacteroidetes_35_48_curated
Two-component system response regulator id=2619129 bin=GWF2_Bacteroidetes_43_63 species=Pedobacter saltans genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_63 organism_group=Bacteroidetes organism_desc=a77
LytTR family two component transcriptional regulator
08E140C01_z5_2013_Ig3399_v2_scaffold_1972_16
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14748..15800)
DNA (1053bp) protein (351aa)
signal transduction histidine kinase Tax=GWA2_Bacteroidetes_31_9_curated
Putative two component system, sensor protein id=3124986 bin=GWF2_Bacteroidetes_29_10 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_29_10 organism_group=Bacteroidetes
signal transduction histidine kinase LytS
08E140C01_z5_2013_Ig3399_v2_scaffold_1972_17
unknown

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16039..16218
DNA (180bp) protein (60aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1972_18
GWB2_Ignavibacteria_35_6b_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

16394..17575
DNA (1182bp) protein (394aa)
fosmidomycin resistance protein Tax=GWB2_Ignavibacteria_35_6b_curated
fosmidomycin resistance protein id=4132056 bin=GWF2_Bacteroidetes_33_16 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_16 organism_group=Bacteroidetes organism_desc=Good rbh
fosmidomycin resistance protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1972_19
GWF2_Bacteroidetes_41_31_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(17621..18955)
DNA (1335bp) protein (445aa)
Signal recognition particle protein id=3494395 bin=GWF2_Bacteroidetes_41_31 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
signal recognition protein; K03106 signal recognition particle subunit SRP54 Tax=GWF2_Bacteroidetes_41_31_curated
signal recognition particle protein; K03106 signal recognition particle subunit SRP54
08E140C01_z5_2013_Ig3399_v2_scaffold_1972_20
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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19187..19444
DNA (258bp) protein (86aa)
LemA family protein n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TUT1_MARTH
LemA protein {ECO:0000313|EMBL:GAO29275.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
lema family protein; K03744 LemA protein
Displaying 20 items

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