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08E140C01_z5_2013_Ig3399_v2_scaffold_3121

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_3121_1
GWE2_Bacteroidetes_32_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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1..1032
DNA (1032bp) protein (344aa)
Signal transduction ATPase, FimS family id=4338962 bin=GWF2_Bacteroidetes_33_16 species=Pseudoalteromonas luteoviolacea genus=Pseudoalteromonas taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_33_16 organism_group=Bacteroidetes organism_desc=Good
signal transduction ATPase Tax=GWE2_Bacteroidetes_32_14_curated
signal transduction histidine kinase LytS
08E140C01_z5_2013_Ig3399_v2_scaffold_3121_2
GWE2_Bacteroidetes_32_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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1048..1773
DNA (726bp) protein (242aa)
Two component transcriptional regulator, LytTR family id=4338961 bin=GWF2_Bacteroidetes_33_16 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Bacteroidetes_33_16 organism_group=Bacteroidetes organism_desc=Good
LytTR family two component transcriptional regulator Tax=GWE2_Bacteroidetes_32_14_curated
two component transcriptional regulator, LytTR family protein
08E140C01_z5_2013_Ig3399_v2_scaffold_3121_trna_1
unknown

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comp(1923..1996)
DNA (74bp)
transferRNA
08E140C01_z5_2013_Ig3399_v2_scaffold_3121_3
Hymenobacter sp. APR13, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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2474..3478
DNA (1005bp) protein (335aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=1356852 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. APR13.;"
aspartate--ammonia ligase, AsnA-type; K01914 aspartate--ammonia ligase [EC:6.3.1.1] rbh
Aspartate--ammonia ligase n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R4I3_OWEHD rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_3121_4
GWF2_Bacteroidetes_41_31_curated, Bacteroidia, Bacteroidetes, Bacteria

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3590..4669
DNA (1080bp) protein (360aa)
fructose-bisphosphate aldolase (EC:4.1.2.13); K01624 fructose-bisphosphate aldolase, class II [EC:4.1.2.13] Tax=GWF2_Bacteroidetes_41_31_curated
fructose-bisphosphate aldolase (EC:4.1.2.13); K01624 fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
Fructose-bisphosphate aldolase id=3052012 bin=GWF2_Bacteroidetes_41_31 species=Nitratifractor salsuginis genus=Nitratifractor taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
08E140C01_z5_2013_Ig3399_v2_scaffold_3121_5
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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comp(4727..5587)
DNA (861bp) protein (287aa)
universal stress protein id=4063607 bin=GWF2_Bacteroidetes_41_31 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
UspA domain-containing protein
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_3121_6
BJP_08E140C01_Bacteriodales_41_10, Bacteriodales, Bacteroidia, Bacteroidetes, Bacteria

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comp(5606..6043)
DNA (438bp) protein (146aa)
Sporulation domain protein id=2152866 bin=GWE2_Bacteroidetes_42_42 species=Pedobacter heparinus genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_42 organism_group=Bacteroidetes organism_desc=Good +
hypothetical protein
Tax=BJP_08E140C01_Bacteriodales_41_10
08E140C01_z5_2013_Ig3399_v2_scaffold_3121_7
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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comp(6054..6881)
DNA (828bp) protein (276aa)
universal stress protein id=4063611 bin=GWF2_Bacteroidetes_41_31 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
UspA domain-containing protein
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_3121_8
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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7022..8044
DNA (1023bp) protein (341aa)
Holliday junction ATP-dependent DNA helicase ruvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvB id=4063613 bin=GWF2_Bacteroidetes_41_31 species=unknown genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_3121_9
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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8250..9176
DNA (927bp) protein (309aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
Epoxyqueuosine reductase n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EWQ2_EMTOG
iron-sulfur cluster binding protein
08E140C01_z5_2013_Ig3399_v2_scaffold_3121_10
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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9203..9763
DNA (561bp) protein (187aa)
Thioredoxin family protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZJQ8_9BACT
Thioredoxin family protein {ECO:0000313|EMBL:EAY29361.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
thioredoxin
08E140C01_z5_2013_Ig3399_v2_scaffold_3121_11
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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comp(9870..10844)
DNA (975bp) protein (325aa)
polyprenyl synthetase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90]
Polyprenyl synthetase n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0IZX7_CYCMS
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_3121_12
CG_Bacteroid_01, Bacteroidetes, Bacteria

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10958..11734
DNA (777bp) protein (259aa)
Fe-S oxidoreductases Tax=CG_Bacteroid_01
Uncharacterized protein id=3052186 bin=GWF2_Bacteroidetes_41_31 species=unknown genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
Fe-S oxidoreductase
08E140C01_z5_2013_Ig3399_v2_scaffold_3121_13
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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11738..12136
DNA (399bp) protein (133aa)
id=3052011 bin=GWF2_Bacteroidetes_41_31 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
hypothetical protein
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_3121_14
BJP_IG2103_Bacteroidetes_37_22, Bacteroidetes, Bacteria

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comp(12203..13039)
DNA (837bp) protein (279aa)
ribonucleoside-diphosphate reductase; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
ribonucleoside-diphosphate reductase class II id=1769373 bin=GWE2_Bacteroidetes_29_8 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_29_8 organism_group=Bacteroidetes organism_desc=Good
Tax=BJP_IG2103_Bacteroidetes_37_22
Displaying 15 items

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