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08E140C01_z5_2013_Ig3399_v2_scaffold_1568

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_1
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(217..1722)
DNA (1506bp) protein (502aa)
lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] rbh
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=555079 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermosediminibacter.;" source="Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 /; JW/IW-1228P).;"
Lysine--tRNA ligase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S027_THEOJ rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_2
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1737..2213)
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=1 Tax=Thermincola potens (strain JR) RepID=D5X9P6_THEPJ
GreA/GreB family elongation factor; K03624 transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_3
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(2440..3525)
DNA (1086bp) protein (362aa)
Putative uncharacterized protein n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3A9M0_CARHZ rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABB13986.1}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 /; Z-2901).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_4
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3542..4459)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LLI2_THEPS rbh
Quinate 5-dehydrogenase {ECO:0000313|EMBL:KJS21775.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
hypothetical protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_5
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4487..5404)
DNA (918bp) protein (306aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=760568 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
tRNA-dihydrouridine synthase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CMH3_DESK7
nifR3 family TIM-barrel protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_6
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(5498..6268)
DNA (771bp) protein (257aa)
pantothenate kinase (EC:2.7.1.33) rbh
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivorans Nor1.;"
Type III pantothenate kinase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRR0_9FIRM rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_7
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6382..6954)
DNA (573bp) protein (191aa)
BioY protein n=1 Tax=Thermincola potens (strain JR) RepID=D5X9N8_THEPJ
BioY protein; K03523 putative biotin biosynthesis protein BioY
BioY protein {ECO:0000313|EMBL:ADG81109.1}; Flags: Precursor;; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_8
Desulfotomaculum reducens, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7053..7424)
DNA (372bp) protein (124aa)
aspartate 1-decarboxylase (EC:4.1.1.11); K01579 aspartate 1-decarboxylase [EC:4.1.1.11]
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=349161 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum reducens (strain MI-1).;"
Aspartate 1-decarboxylase n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J0V8_DESRM
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_9
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7436..8302)
DNA (867bp) protein (289aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
panC; pantoate--beta-alanine ligase (EC:6.3.2.1); K01918 pantoate--beta-alanine ligase [EC:6.3.2.1]
Pantothenate synthetase n=1 Tax=Clostridium thermocellum BC1 RepID=U4MTI9_CLOTM
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_10
Syntrophothermus lipocalidus, Syntrophothermus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8327..9157)
DNA (831bp) protein (277aa)
3-methyl-2-oxobutanoatehydroxymethyltransferase (EC:2.1.2.11); K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] rbh
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=643648 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophothermus.;" source="Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1).;"
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CJ47_SYNLT rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_11
CG_Dehalo_01, Dehalococcoidia, Chloroflexi, Bacteria

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comp(9157..10026)
DNA (870bp) protein (290aa)
pyrroline-5-carboxylate reductase Tax=CG_Dehalo_01
cbdbA779; hypothetical protein id=1241852 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
coenzyme F420-dependent NADP oxidoreductase
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_12
Staphylococcus arlettae, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(10273..10785)
DNA (513bp) protein (171aa)
folK; 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=2 Tax=Staphylococcus RepID=K0U173_9STAP
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:EJY95922.1}; TaxID=1212545 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus arlettae CVD059.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_13
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10775..11128)
DNA (354bp) protein (118aa)
dihydroneopterin aldolase; K01633 dihydroneopterin aldolase [EC:4.1.2.25]
Dihydroneopterin aldolase n=2 Tax=Clostridium thermocellum RepID=A3DIK3_CLOTH
Dihydroneopterin aldolase {ECO:0000313|EMBL:GAE87308.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_14
Thermacetogenium phaeum, Thermacetogenium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(11167..12360)
DNA (1194bp) protein (398aa)
dihydropteroate synthase (EC:2.5.1.15) rbh
Dihydropteroate synthase {ECO:0000313|EMBL:AFV12844.1}; EC=2.5.1.15 {ECO:0000313|EMBL:AFV12844.1};; TaxID=1089553 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermacetogenium.;" source="Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB).;"
Dihydropteroate synthase n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LY33_THEPS rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_15
Syntrophomonas zehnderi, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12393..14063)
DNA (1671bp) protein (557aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=690567 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas zehnderi OL-4.;"
formyltetrahydrofolate synthetase (EC:6.3.4.3) rbh
Formate--tetrahydrofolate ligase n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GJR4_9FIRM rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_16
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14151..14546)
DNA (396bp) protein (132aa)
Thioesterase family protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CWY2_9CLOT
Thioesterase family protein {ECO:0000313|EMBL:EOD01134.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_17
Syntrophothermus lipocalidus, Syntrophothermus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14633..15079)
DNA (447bp) protein (149aa)
nucleoside-diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6]
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=643648 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophothermus.;" source="Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1).;"
Nucleoside diphosphate kinase n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CJ40_SYNLT
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_18
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(15094..16902)
DNA (1809bp) protein (603aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
ATP-dependent metalloprotease ftsh; K03798 cell division protease FtsH [EC:3.4.24.-] rbh
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Heliobacillus mobilis RepID=Q9ZGE1_HELMO rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_19
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(17056..18444)
DNA (1389bp) protein (463aa)
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] rbh
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=429009 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Ammonifex degensii (strain DSM 10501 / KC4).;"
tRNA(Ile)-lysidine synthase n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RA09_AMMDK rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_20
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18552..20918)
DNA (2367bp) protein (789aa)
stage II sporulation protein E; K06382 stage II sporulation protein E [EC:3.1.3.16] rbh
Stage II sporulation protein E n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DMT7_DESRL rbh
Uncharacterized protein {ECO:0000313|EMBL:KJS19035.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1568_21
unknown

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comp(21018..22241)
DNA (1224bp) protein (408aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1568_22
unknown

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comp(22189..23136)
DNA (948bp) protein (316aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1568_23
Methanohalophilus mahii, Methanohalophilus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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23280..23693
DNA (414bp) protein (138aa)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EA05_METMS
peptidylprolyl isomerase FKBP-type
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}; TaxID=547558 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalophilus.;" source="Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP).;"
Displaying 23 items

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