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08E140C01_z5_2013_Ig3399_v2_scaffold_1901

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_1
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..923
DNA (921bp) protein (307aa)
(S)-2-hydroxy-acid oxidase {ECO:0000313|EMBL:EHI99002.1}; EC=1.1.3.15 {ECO:0000313|EMBL:EHI99002.1};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
(S)-2-hydroxy-acid oxidase n=1 Tax=Clostridium sp. DL-VIII RepID=G7M0E1_9CLOT
LldD; L-lactate dehydrogenase
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_2
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1020..2540)
DNA (1521bp) protein (507aa)
2-isopropylmalate synthase n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000364BA18 rbh
2-isopropylmalate synthase, bacterial type rbh
Tax=BJP_08E140C01_Clostridiales_46_19
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_3
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

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3083..3625
DNA (543bp) protein (181aa)
Transcriptional regulator, MarR family n=2 Tax=Sulfobacillus acidophilus RepID=F8I4A9_SULAT
MarR family transcriptional regulator
Tax=BJP_08E140C01_Clostridiales_46_19
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_4
CG_Desulfob_01, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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3654..4226
DNA (573bp) protein (191aa)
Rubrerythrin n=1 Tax=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) RepID=C6BV23_DESAD rbh
rubrerythrin Tax=CG_Desulfob_01
rubrerythrin rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_5
RBG_19FT_COMBO_Deltaproteobacteria_46_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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4242..4622
DNA (381bp) protein (127aa)
rbo; desulfoferrodoxin; K05919 superoxide reductase [EC:1.15.1.2] Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_9_curated
desulfoferrodoxin (EC:1.15.1.1); K05919 superoxide reductase [EC:1.15.1.2]
Desulfoferrodoxin n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NDC8_DESAR
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_6
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4649..4810
DNA (162bp) protein (54aa)
Rubredoxin n=1 Tax=Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4) RepID=I4D117_DESAJ
rubredoxin
Rubredoxin {ECO:0000256|PIRNR:PIRNR000071}; TaxID=646529 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_7
Desulfosporosinus orientis, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4840..6006
DNA (1167bp) protein (389aa)
Putative flavoprotein n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7W726_DESOD rbh
putative flavoprotein rbh
Putative flavoprotein {ECO:0000313|EMBL:AET69883.1}; TaxID=768706 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 /; VKM B-1628) (Desulfotomaculum orientis).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_trna_1
unknown

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6059..6130
DNA (72bp)
transferRNA
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_trna_2
unknown

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6139..6211
DNA (73bp)
transferRNA
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_8
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6381..7511
DNA (1131bp) protein (377aa)
Rod shape-determining protein RodA n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W5R3_DESAS rbh
rod shape-determining protein RodA; K05837 rod shape determining protein RodA rbh
Rod shape-determining protein RodA {ECO:0000313|EMBL:ACV64063.1}; TaxID=485916 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM; B-1644).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_9
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7519..8625)
DNA (1107bp) protein (369aa)
Glycosyl transferase group 1 n=1 Tax=Thermincola potens (strain JR) RepID=D5X8S7_THEPJ
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ADG82953.1}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_10
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(8639..10816)
DNA (2178bp) protein (726aa)
Uncharacterized protein n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RY44_THEOJ rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADL08268.1}; Flags: Precursor;; TaxID=555079 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermosediminibacter.;" source="Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 /; JW/IW-1228P).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_11
Peptococcaceae bacterium BRH_c8a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11041..12045)
DNA (1005bp) protein (335aa)
Sodium/calcium exchanger membrane region n=1 Tax=Desulfotomaculum nigrificans DSM 574 RepID=F0DKT3_9FIRM rbh
Membrane protein {ECO:0000313|EMBL:KJS13946.1}; TaxID=1629715 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c8a.;"
sodium/calcium exchanger membrane protein; K07301 inner membrane protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_12
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12263..12751)
DNA (489bp) protein (163aa)
Rubrerythrin n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7WG08_DESOD
Rubrerythrin {ECO:0000313|EMBL:KJS21508.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
rubrerythrin
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_13
Caldicellulosiruptor bescii, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(12779..13021)
DNA (243bp) protein (81aa)
Uncharacterized protein n=4 Tax=Caldicellulosiruptor RepID=B9MK67_CALBD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM60725.1}; TaxID=521460 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320); (Anaerocellum thermophilum).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_14
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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13214..14905
DNA (1692bp) protein (564aa)
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI000374982C
Uncharacterized protein {ECO:0000313|EMBL:KJS21106.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
glycoside hydrolase family protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_15
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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15031..16728
DNA (1698bp) protein (566aa)
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI000374982C rbh
Uncharacterized protein {ECO:0000313|EMBL:KJS21106.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
glycoside hydrolase family protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_16
Thermacetogenium phaeum, Thermacetogenium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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16800..16988
DNA (189bp) protein (63aa)
4Fe-4S ferredoxin iron-sulfur binding protein n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LSI6_THEPS
fdxA; 4Fe-4S ferredoxin
4Fe-4S ferredoxin iron-sulfur binding protein {ECO:0000313|EMBL:AFV11044.1}; TaxID=1089553 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermacetogenium.;" source="Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_17
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17136..17654
DNA (519bp) protein (173aa)
Transcriptional repressor for NAD biosynthesis in gram-positives n=1 Tax=Thermobrachium celere DSM 8682 RepID=R7RUW3_9CLOT
3H domain protein {ECO:0000313|EMBL:KIE48410.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
3H domain-containing protein; K07105
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_18
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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17794..18399
DNA (606bp) protein (202aa)
Negative regulator of genetic competence n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VP77_CLOSH
Uncharacterized protein {ECO:0000313|EMBL:KJS21514.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
regulator
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_19
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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18750..19763
DNA (1014bp) protein (338aa)
3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:KJS19730.1}; EC=2.5.1.54 {ECO:0000313|EMBL:KJS19730.1};; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] rbh
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8E0D1_9FIRM rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1901_20

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19787..20107
DNA (321bp) protein (107aa)
prephenate dehydrogenase (EC:1.3.1.12); K04517 prephenate dehydrogenase [EC:1.3.1.12]
hypothetical protein n=1 Tax=Atribacteria bacterium JGI 0000059-I14 RepID=UPI0003623150
Marine sediment metagenome DNA, contig: S06H3_C00525 {ECO:0000313|EMBL:GAH99475.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Displaying 22 items

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