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08E140C01_z5_2013_Ig3399_v2_scaffold_3223

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_3223_1
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..1805)
DNA (1803bp) protein (601aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
pnp; polynucleotide phosphorylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSC0_9FIRM
08E140C01_z5_2013_Ig3399_v2_scaffold_3223_2
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1951..2214)
DNA (264bp) protein (88aa)
30S ribosomal protein S15 n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=RS15_GEOUR
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
30S ribosomal protein S15 {ECO:0000255|HAMAP-Rule:MF_01343}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_3223_3
BJP_IG2158_Thermincola_46_17, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2350..2571)
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W4N8_DESAS
hypothetical protein
Tax=BJP_IG2158_Thermincola_46_17
08E140C01_z5_2013_Ig3399_v2_scaffold_3223_4
unknown

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comp(2552..2803)
DNA (252bp) protein (84aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_3223_5
Desulfotomaculum ruminis, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2879..3835)
DNA (957bp) protein (319aa)
riboflavin biosynthesis protein RibF; K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=696281 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 /; DL).;"
Riboflavin biosynthesis protein RibF n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DUM4_DESRL
08E140C01_z5_2013_Ig3399_v2_scaffold_3223_6
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3813..4763)
DNA (951bp) protein (317aa)
tRNA pseudouridine synthase B (EC:4.2.1.70); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043051}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043054};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (stra
tRNA pseudouridine synthase B n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LZT5_CLOCD
08E140C01_z5_2013_Ig3399_v2_scaffold_3223_7
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(4760..5779)
DNA (1020bp) protein (340aa)
Phosphoesterase RecJ domain protein n=6 Tax=Clostridium thermocellum RepID=A3DE42_CLOTH
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP66828.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
phosphoesterase, RecJ-like protein; K06881 phosphoesterase RecJ domain-containing protein
08E140C01_z5_2013_Ig3399_v2_scaffold_3223_8
Thermoanaerobacter kivui, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(5724..6095)
DNA (372bp) protein (124aa)
Ribosome-binding factor A n=6 Tax=Thermoanaerobacter RepID=B0K1D5_THEPX
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=2325 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter kivui (Acetogenium kivui).;"
ribosome-binding factor A; K02834 ribosome-binding factor A
08E140C01_z5_2013_Ig3399_v2_scaffold_3223_9
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6135..8699)
DNA (2565bp) protein (855aa)
Translation initiation factor IF-2 n=1 Tax=Thermincola potens (strain JR) RepID=D5XF13_THEPJ rbh
translation initiation factor IF-2; K02519 translation initiation factor IF-2 rbh
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_3223_10
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8700..9044)
DNA (345bp) protein (115aa)
Ribosomal protein L7Ae family protein n=1 Tax=Caloramator australicus RC3 RepID=I7KUE3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJS23449.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
50S ribosomal protein L7
08E140C01_z5_2013_Ig3399_v2_scaffold_3223_11
Syntrophothermus lipocalidus, Syntrophothermus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9028..9303)
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI000371D7D2
hypothetical protein; K07742 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI01780.1}; TaxID=643648 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophothermus.;" source="Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_3223_12
Heliobacterium modesticaldum, Heliobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9320..10405)
DNA (1086bp) protein (362aa)
Transcription termination factor nusa n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0THR0_HELMI rbh
nusA; transcription termination factor nusa; K02600 N utilization substance protein A rbh
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=498761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Heliobacteriaceae; Heliobacterium.;" source="Heliobacterium modesticaldum (strain ATCC 51547 / Ice1).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_3223_13
Halobacteroides halobius, Halobacteroides, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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comp(10402..10887)
DNA (486bp) protein (162aa)
Ribosome maturation factor RimP n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K8H8_HALHC
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=748449 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halobacteroidaceae; Halobacteroides.;" source="Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_3223_14
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11083..12678)
DNA (1596bp) protein (532aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
polC; DNA polymerase iii, alpha subunit, gram-positive type; K03763 DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
DNA polymerase iii, alpha subunit, gram-positive type n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0THP5_HELMI
Displaying 14 items

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