ggKbase home page

08E140C01_z5_2013_Ig3399_v2_scaffold_834

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_834_1
Natranaerobius thermophilus, Natranaerobius, Natranaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

191..1471
DNA (1281bp) protein (427aa)
Major facilitator superfamily MFS_1 n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A844_NATTJ rbh
major facilitator superfamily protein rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACB85812.1}; TaxID=457570 species="Bacteria; Firmicutes; Clostridia; Natranaerobiales; Natranaerobiaceae; Natranaerobius.;" source="Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 /; JW/NM-WN-LF).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_834_2
Peptococcaceae bacterium BRH_c4b, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1479..2720)
DNA (1242bp) protein (414aa)
Histidine kinase n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W3M0_DESAS rbh
Histidine kinase {ECO:0000313|EMBL:KJS16184.1}; TaxID=1629717 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c4b.;"
histidine kinase rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_834_3
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2659..3345)
DNA (687bp) protein (229aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W3M1_DESAS rbh
two component transcriptional regulator, winged helix family rbh
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACV63807.1}; TaxID=485916 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM; B-1644).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_834_4
Peptococcaceae bacterium BRH_c4b, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3526..3984)
DNA (459bp) protein (153aa)
Ubiquitin-associated-domain-containing protein n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W3M2_DESAS
Ubiquitin {ECO:0000313|EMBL:KJS16186.1}; TaxID=1629717 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c4b.;"
ubiquitin-associated-domain-containing protein
08E140C01_z5_2013_Ig3399_v2_scaffold_834_5
Caloranaerobacter sp. DY22619, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4200..6800
DNA (2601bp) protein (867aa)
Periplasmic [Fe] hydrogenase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CMY2_9CLOT rbh
Periplasmic [FeFe] hydrogenase large subunit {ECO:0000313|EMBL:AIZ97529.1}; TaxID=1323370 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter sp. DY22619.;"
Fis family transcriptional regulator rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_834_6
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7112..7402
DNA (291bp) protein (97aa)
Putative uncharacterized protein id=4199508 bin=GWC2_Clostridiales_40_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_Clostridiales_40_7 organism_group=Firmicute
hypothetical protein
Tax=BJP_IG2103_Clostridiales_50_15
08E140C01_z5_2013_Ig3399_v2_scaffold_834_7
RIFOXYA2_FULL_RIF01_40_8_curated, RIF1, Bacteria

Not on your lists

7399..9339
DNA (1941bp) protein (647aa)
Na+/solute symporter; K03307 solute:Na+ symporter, SSS family Tax=RIFOXYA2_FULL_RIF01_40_8_curated
Sodium:solute symporter family protein id=4199507 bin=GWC2_Clostridiales_40_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_Clostridiales_40_7 organism_group=Firmicute rbh
Na+/solute symporter; K03307 solute:Na+ symporter, SSS family rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_834_8
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9457..10614)
DNA (1158bp) protein (386aa)
aspC; aspartate aminotransferase AspC (EC:2.6.1.19) rbh
Aspartate aminotransferase AspC n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B2I9_CLOA9 rbh
Aromatic amino acid aminotransferase {ECO:0000313|EMBL:KGM94683.1}; TaxID=1444289 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi A str. 4552.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_834_9
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10611..11090)
DNA (480bp) protein (160aa)
Transcriptional regulator, AsnC family protein n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EFW0_CLOPA
AsnC family transcriptional regulator {ECO:0000313|EMBL:KGK90791.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
transcriptional regulator
08E140C01_z5_2013_Ig3399_v2_scaffold_834_10
unknown

Not on your lists

comp(11184..11348)
DNA (165bp) protein (55aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_834_11
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11577..11918
DNA (342bp) protein (114aa)
Nitrogen regulatory protein PII n=1 Tax=Clostridium sp. BNL1100 RepID=H2JE83_9CLOT
nitrogen regulatory protein PII; K04751 nitrogen regulatory protein P-II 1
Nitrogen regulatory protein PII {ECO:0000313|EMBL:AEY65341.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_834_12
Pelosinus sp. UFO1, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

12035..13204
DNA (1170bp) protein (390aa)
NADP-dependent oxidoreductase domain-containing protein n=1 Tax=Pelosinus fermentans JBW45 RepID=I8TXH8_9FIRM rbh
NADP-dependent oxidoreductase domain containing protein {ECO:0000313|EMBL:AIF51344.1}; TaxID=484770 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus sp. UFO1.;"
aldo/keto reductase; K07079 rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_834_13
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13201..13893)
DNA (693bp) protein (231aa)
Di-trans-poly-cis-decaprenylcistransferase; K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] rbh
Di-trans-poly-cis-decaprenylcistransferase n=1 Tax=Thermincola potens (strain JR) RepID=D5XDE7_THEPJ rbh
Di-trans-poly-cis-decaprenylcistransferase {ECO:0000313|EMBL:ADG81795.1}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_834_14
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14150..14899)
DNA (750bp) protein (250aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum DSM 3953.;"
lolD; outer membrane-specific lipoprotein ABC transporter ATP-binding protein; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-]
ABC transporter n=1 Tax=candidate division OP9 bacterium OP9-77CS RepID=UPI0003634BB8
08E140C01_z5_2013_Ig3399_v2_scaffold_834_15
Caldatribacterium saccharofermentans, Caldatribacterium, Atribacteria, Bacteria

Not on your lists

comp(14892..16118)
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=candidate division OP9 bacterium OP9-77CS RepID=UPI000380142D rbh
integral membranepermease; K09808 lipoprotein-releasing system permease protein Tax=Caldatribacterium saccharofermentans
integral membranepermease; K09808 lipoprotein-releasing system permease protein
08E140C01_z5_2013_Ig3399_v2_scaffold_834_16
Caldatribacterium saccharofermentans, Caldatribacterium, Atribacteria, Bacteria

Not on your lists

comp(16123..17319)
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=candidate division OP9 bacterium OP9-cSCG RepID=UPI0003730064
hypothetical protein; K02005 HlyD family secretion protein Tax=Caldatribacterium saccharofermentans
mdtA1; RND family efflux transporter; K02005 HlyD family secretion protein
08E140C01_z5_2013_Ig3399_v2_scaffold_834_17
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

comp(17339..18463)
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002D46590
Putative uncharacterized protein {ECO:0000313|EMBL:EHO42428.1}; Flags: Precursor;; TaxID=880073 species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_834_18
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

18689..20050
DNA (1362bp) protein (454aa)
citrate synthase (EC:2.3.3.5); K01647 citrate synthase [EC:2.3.3.1] rbh
Citrate synthase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RJF3_MOOTA rbh
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_834_19
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20084..20848)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQV9_9FIRM rbh
Galactose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:KJS18781.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_834_20
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21610..23208
DNA (1599bp) protein (533aa)
RNA-metabolising metallo-beta-lactamase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RJ88_MOOTA rbh
Metallo-beta-lactamase {ECO:0000313|EMBL:KJS22556.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
RNA-metabolising metallo-beta-lactamase; K07576 metallo-beta-lactamase family protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_834_21
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

23304..24524
DNA (1221bp) protein (407aa)
Putative uncharacterized protein id=2103094 bin=GWE2_RBX1_39_32 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria rbh
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_834_22
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24521..25216)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M229_CLOCD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV68147.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_834_23
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25406..27022
DNA (1617bp) protein (539aa)
Dak phosphatase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TRV4_ALKMQ
Dak phosphatase; K07030
Dak phosphatase {ECO:0000313|EMBL:ABR48922.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_834_24
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27042..27890
DNA (849bp) protein (283aa)
DegV family protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJS22561.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
degV family protein
08E140C01_z5_2013_Ig3399_v2_scaffold_834_25
unknown

Not on your lists

27993..28757
DNA (765bp) protein (255aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_834_26
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28768..29034
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Caloramator australicus RC3 RepID=I7LIM3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCJ33077.1}; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
type III secretion exporter; K04061 flagellar biosynthesis protein
08E140C01_z5_2013_Ig3399_v2_scaffold_834_27
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29446..30690
DNA (1245bp) protein (415aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5CYL7_PELTS
Uncharacterized protein {ECO:0000313|EMBL:KJS22564.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
RbsB; ABC-type sugar transport system, periplasmic component
08E140C01_z5_2013_Ig3399_v2_scaffold_834_28
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30799..31473
DNA (675bp) protein (225aa)
Putative uncharacterized protein n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W4G3_DESAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV62031.1}; TaxID=485916 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM; B-1644).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_834_29
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31466..31927
DNA (462bp) protein (154aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
rRNA methylase, putative, group 2; K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VSD6_9CLOT
08E140C01_z5_2013_Ig3399_v2_scaffold_834_trna_1
unknown

Not on your lists

comp(31975..32046)
DNA (72bp)
transferRNA
Displaying items 1-30 of 38 in total

View Taxonomy