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Ig7659_scaffold_15

Search features with annotation key words

Displaying items 1-30 of 203 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig7659_scaffold_15_1
Alteromonas macleodii, Alteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..113)
DNA (111bp) protein (37aa)
Elongation factor Tu n=1 Tax=Alteromonas macleodii (strain Black Sea 11) RepID=K0D8E1_ALTMS
elongation factor Tu
Uncharacterized protein {ECO:0000313|EMBL:AGP99195.1}; TaxID=1300258 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alteromonas.;" source="Alteromonas macleodii str. 'Ionian Sea UM7'.;"
Ig7659_scaffold_15_trna_3
unknown

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comp(161..232)
DNA (72bp)
transferRNA Thr
Ig7659_scaffold_15_trna_2
unknown

Not on your lists

comp(298..368)
DNA (71bp)
transferRNA Gly
Ig7659_scaffold_15_trna_1
unknown

Not on your lists

comp(454..536)
DNA (83bp)
transferRNA Tyr
Ig7659_scaffold_15_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(594..1340)
DNA (747bp) protein (249aa)
Uracil-DNA glycosylase id=1274451 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
uracil-DNA glycosylase
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_15_3
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1351..2151)
DNA (801bp) protein (267aa)
trpC; indole-3-glycerol phosphate synthase TrpC (EC:4.1.1.48) rbh
Indole-3-glycerol phosphate synthase id=1274452 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig7659_scaffold_15_4
R_Betaproteobacteria_61_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2148..2288)
DNA (141bp) protein (47aa)
id=5082776 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax ebreus genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Tax=RifCSPlowO2_12_Betaproteobacteria_61_14_curated
Ig7659_scaffold_15_5
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2297..3364)
DNA (1068bp) protein (356aa)
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18); K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18] id=5082777 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18) rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig7659_scaffold_15_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3380..4030)
DNA (651bp) protein (217aa)
Threonine efflux protein id=1274455 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
lysine exporter protein LysE/YggA
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_15_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4051..5124)
DNA (1074bp) protein (358aa)
ltaE; low-specificity L-threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] id=5082779 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
threonine aldolase (EC:4.1.2.5)
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_15_8
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5121..5717)
DNA (597bp) protein (199aa)
Anthranilate synthase component II id=1274457 bin=GWE1_Burkholderiales_65_30 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
anthranilate synthase component II rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig7659_scaffold_15_9
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5723..7222)
DNA (1500bp) protein (500aa)
anthranilate synthase component I (EC:4.1.3.27) rbh
Anthranilate synthase component I n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MGH1_9BURK rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig7659_scaffold_15_10
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7628..8239
DNA (612bp) protein (204aa)
Putative lipoprotein transmembrane id=1274459 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Ig7659_scaffold_15_11
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8263..8958)
DNA (696bp) protein (232aa)
phosphoglycolate phosphatase (EC:3.1.3.18); K01091 phosphoglycolate phosphatase [EC:3.1.3.18] id=5082785 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Delftia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
phosphoglycolate phosphatase (EC:3.1.3.18)
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_15_12
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8958..9638)
DNA (681bp) protein (227aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
ribulose-phosphate 3-epimerase (EC:5.1.3.1) rbh
Ribulose-phosphate 3-epimerase id=1274463 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Ig7659_scaffold_15_13
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9727..10137
DNA (411bp) protein (137aa)
Protein ApaG id=1274464 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
apaG; ApaG protein
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_15_14
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10190..12415
DNA (2226bp) protein (742aa)
Site-specific recombinase Gcr id=1274465 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
site-specific recombinase gcr rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig7659_scaffold_15_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12412..13422
DNA (1011bp) protein (337aa)
thiamine-monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16] id=5082789 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
thiamine monophosphate kinase
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_15_16
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13471..14028
DNA (558bp) protein (186aa)
phosphatidylglycerophosphatase (EC:3.1.3.27); K01095 phosphatidylglycerophosphatase A [EC:3.1.3.27] id=5082790 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
phosphatidylglycerophosphatase (EC:3.1.3.27)
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig7659_scaffold_15_17
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14030..14518
DNA (489bp) protein (163aa)
CinA domain-containing protein id=1274468 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
CinA domain-containing protein
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig7659_scaffold_15_18
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

comp(14507..15481)
DNA (975bp) protein (325aa)
NAD-dependent epimerase/dehydratase id=12557869 bin=CNBR_ACIDO species=Spirosoma linguale genus=Spirosoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
NAD-dependent epimerase/dehydratase rbh
Tax=CG_Deferri_01
Ig7659_scaffold_15_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15554..15985
DNA (432bp) protein (144aa)
LysR family transcriptional regulator id=5082793 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
LysR family transcriptional regulator
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_15_20
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15996..17138
DNA (1143bp) protein (381aa)
hypothetical protein id=5082794 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig7659_scaffold_15_21
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17342..17809
DNA (468bp) protein (156aa)
id=5082795 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_15_22
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17941..19653)
DNA (1713bp) protein (571aa)
Preprotein translocase subunit SecA {ECO:0000313|EMBL:EWS63422.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
YecA; K07039 uncharacterized protein id=5082796 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
sec-c motif domain-containing protein
Ig7659_scaffold_15_23
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19753..21489)
DNA (1737bp) protein (579aa)
dihydroorotase (EC:3.5.2.3) rbh
Dihydroorotase {ECO:0000313|EMBL:ABD27523.1}; EC=3.5.2.3 {ECO:0000313|EMBL:ABD27523.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Dihydroorotase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3Q0_NOVAD rbh
Ig7659_scaffold_15_24
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21894..22748)
DNA (855bp) protein (285aa)
NmrA family protein id=5082799 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
NmrA family protein rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig7659_scaffold_15_25
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22838..23299
DNA (462bp) protein (154aa)
HxlR family transcriptional regulator id=5082800 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
HxlR family transcriptional regulator
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig7659_scaffold_15_26
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23427..23672
DNA (246bp) protein (82aa)
hypothetical protein id=5082801 bin=GWF1_Burkholderiales_GWF1_66_17 species=uncultured organism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_15_27
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23694..24086)
DNA (393bp) protein (131aa)
glutaredoxin family protein id=5082802 bin=GWF1_Burkholderiales_GWF1_66_17 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
glutaredoxin family protein
Tax=BJP_08E140C01_Burkholderiales_65_30
Displaying items 1-30 of 203 in total

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