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Ig7659_scaffold_396

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig7659_scaffold_396_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1322)
DNA (1320bp) protein (440aa)
peptidase M48, Ste24p id=5081403 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
peptidase M48, Ste24p
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_396_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1385..1894
DNA (510bp) protein (170aa)
molybdenum cofactor biosynthesis protein C; K03637 molybdenum cofactor biosynthesis protein C id=5081402 bin=GWF1_Burkholderiales_GWF1_66_17 species=Comamonas testosteroni genus=Comamonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
molybdenum cofactor biosynthesis protein C
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_396_3
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1875..2261)
DNA (387bp) protein (129aa)
death-on-curing protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI000379660B
Death-on-curing protein {ECO:0000313|EMBL:GAO34636.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
death-on-curing family protein
Ig7659_scaffold_396_4
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2258..2485)
DNA (228bp) protein (76aa)
Addiction module antidote protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IRB2_HERSS
Transcriptional regulator {ECO:0000313|EMBL:GAO34637.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
phd; addiction module antidote protein
Ig7659_scaffold_396_5
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2760..3062)
DNA (303bp) protein (101aa)
Plasmid maintenance system antidote protein n=2 Tax=Burkholderia RepID=I5CKJ8_9BURK
XRE family plasmid maintenance system antidote protein
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig7659_scaffold_396_6
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3299..3484
DNA (186bp) protein (62aa)
Molybdenum cofactor biosynthesis protein C {ECO:0000313|EMBL:EWS65917.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
Molybdenum cofactor biosynthesis protein C id=1283734 bin=GWE1_Burkholderiales_65_30 species=Comamonas testosteroni genus=Comamonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
moaC; molybdenum cofactor biosynthesis protein MoaC
Ig7659_scaffold_396_7
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3625..4395)
DNA (771bp) protein (257aa)
Fimbrial assembly protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SBT4_METPP
fimB; fimbrial assembly protein
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig7659_scaffold_396_8
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4547..5089)
DNA (543bp) protein (181aa)
Type IV pilin structural subunit n=2 Tax=Pseudomonas aeruginosa RepID=Q02GR5_PSEAB
Pilin {ECO:0000313|EMBL:EWS65911.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
pilA; type IV pilin structural subunit
Ig7659_scaffold_396_9
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5548..6099)
DNA (552bp) protein (184aa)
Type IV pilin structural subunit n=2 Tax=Pseudomonas aeruginosa RepID=Q02GR5_PSEAB
pilA; type IV pilin structural subunit
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig7659_scaffold_396_10
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6423..7226)
DNA (804bp) protein (268aa)
3',5'-cyclic-nucleotide phosphodiesterase id=5081398 bin=GWF1_Burkholderiales_GWF1_66_17 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
3',5'-cyclic-nucleotide phosphodiesterase rbh
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_396_11
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7263..9512)
DNA (2250bp) protein (750aa)
adenylate/guanylate cyclase with chase sensor; K01768 adenylate cyclase [EC:4.6.1.1] id=5081397 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
adenylate/guanylate cyclase with chase sensor rbh
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_396_12
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9580..10203)
DNA (624bp) protein (208aa)
FHA-domain-containing proteins id=5081396 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
FHA-domain-containing proteins rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig7659_scaffold_396_13
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10237..11031)
DNA (795bp) protein (265aa)
Serine/threonine phosphatase stp {ECO:0000313|EMBL:EWS64682.1}; EC=3.1.3.16 {ECO:0000313|EMBL:EWS64682.1};; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
protein phosphatase; K01090 protein phosphatase [EC:3.1.3.16] id=5081395 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
protein phosphatase rbh
Ig7659_scaffold_396_14
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11065..11706)
DNA (642bp) protein (214aa)
Serine/threonine-protein kinase PknB {ECO:0000313|EMBL:EWS64681.1}; EC=2.7.11.1 {ECO:0000313|EMBL:EWS64681.1};; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
Protein kinase family protein id=1283742 bin=GWE1_Burkholderiales_65_30 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
serine/threonine protein kinase
Ig7659_scaffold_396_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11935..12828)
DNA (894bp) protein (298aa)
succinyl-CoA synthetase subunit alpha (EC:6.2.1.5) rbh
Succinyl-CoA ligase [ADP-forming] subunit alpha id=1283743 bin=GWE1_Burkholderiales_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_396_16
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12847..14007)
DNA (1161bp) protein (387aa)
succinyl-CoA synthetase subunit beta (EC:6.2.1.5) rbh
Succinyl-CoA ligase [ADP-forming] subunit beta id=1283744 bin=GWE1_Burkholderiales_65_30 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig7659_scaffold_396_17
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14195..15118
DNA (924bp) protein (308aa)
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] id=5081391 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38) rbh
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_396_18
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15129..15533)
DNA (405bp) protein (135aa)
hypothetical protein id=5081390 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
methyl-accepting chemotaxis sensory transducer
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_396_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15646..16095)
DNA (450bp) protein (150aa)
regulatory protein RecX; K03565 regulatory protein id=5081389 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
regulatory protein RecX
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_396_20
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16141..17238)
DNA (1098bp) protein (366aa)
Protein RecA id=1283748 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
recombination protein RecA
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_396_21
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17490..17975
DNA (486bp) protein (162aa)
MarR family transcriptional regulator id=1283749 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
MarR family transcriptional regulator
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_396_22
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18145..18819
DNA (675bp) protein (225aa)
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator id=5081386 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
two component transcriptional regulator
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_396_23
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19043..20518
DNA (1476bp) protein (492aa)
integral membrane sensor signal transduction histidine kinase; K07649 two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] id=5081385 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
signal transduction histidine kinase
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig7659_scaffold_396_24
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20538..21194)
DNA (657bp) protein (219aa)
Glutathione S-transferase id=1283752 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
glutathione S-transferase
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_396_25
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21230..24199)
DNA (2970bp) protein (990aa)
DNA topoisomerase III (EC:5.99.1.2); K03169 DNA topoisomerase III [EC:5.99.1.2] id=5081383 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
DNA topoisomerase III (EC:5.99.1.2)
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_396_26
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24298..24834
DNA (537bp) protein (179aa)
Nuclear protein SET id=1283754 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
nuclear protein SET
Tax=GWE1_Burkholderiales_65_30_curated
Ig7659_scaffold_396_27
unknown

Not on your lists

24831..24989
DNA (159bp) protein (53aa)

This feature has no annotations

Ig7659_scaffold_396_28
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24982..25794
DNA (813bp) protein (271aa)
biotin--acetyl-CoA-carboxylase ligase (EC:6.3.4.15); K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] id=5081381 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
biotin-(acetyl-CoA carboxylase) ligase
Tax=BJP_08E140C01_Burkholderiales_65_30
Ig7659_scaffold_396_29
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25788..26549
DNA (762bp) protein (254aa)
sporulation domain-containing protein id=5081380 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
sporulation domain-containing protein
Tax=BJP_08E140C01_Burkholderiales_65_30
Displaying 29 items

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