ggKbase home page

Ig3397_v2_scaffold_494

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_494_1
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(3..401)
DNA (399bp) protein (133aa)
Putative uncharacterized protein id=2997236 bin=GWC2_Pelobacter_58_13 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=BJP_08E140C01_Coriobacteriales_62_12
Ig3397_v2_scaffold_494_2
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(398..847)
DNA (450bp) protein (150aa)
Putative uncharacterized protein id=2997232 bin=GWC2_Pelobacter_58_13 species=Thermococcus sp. AM4 genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=BJP_08E140C01_Coriobacteriales_62_12
Ig3397_v2_scaffold_494_3
Eggerthella sp. YY7918, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(880..1275)
DNA (396bp) protein (132aa)
Predicted transcriptional regulator n=1 Tax=Eggerthella sp. (strain YY7918) RepID=F7UVS8_EEGSY
putative transcriptional regulator
Predicted transcriptional regulator {ECO:0000313|EMBL:BAK45301.1}; TaxID=502558 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella.;" source="Eggerthella sp. (strain YY7918).;"
Ig3397_v2_scaffold_494_4
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(1373..2110)
DNA (738bp) protein (246aa)
hypothetical protein id=1247632 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
Tax=BJP_08E140C01_Coriobacteriales_62_12
Ig3397_v2_scaffold_494_5
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(2198..2722)
DNA (525bp) protein (175aa)
Tax=BJP_IG2102_Coriobacteriales_64_17
Ig3397_v2_scaffold_494_6
unknown

Not on your lists

comp(2828..3562)
DNA (735bp) protein (245aa)

This feature has no annotations

Ig3397_v2_scaffold_494_7
unknown

Not on your lists

comp(3573..4247)
DNA (675bp) protein (225aa)

This feature has no annotations

Ig3397_v2_scaffold_494_8
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4359..5507)
DNA (1149bp) protein (383aa)
Putative oxidoreductase of aldo/keto reductase family n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U7S0_9CLOT
Putative oxidoreductase of aldo/keto reductase family {ECO:0000313|EMBL:EKQ58186.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
aldo/keto reductase; K07079
Ig3397_v2_scaffold_494_9
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(5648..7471)
DNA (1824bp) protein (608aa)
recQ; ATP-dependent DNA helicase RecQ (EC:3.6.1.-); K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
ATP-dependent DNA helicase RecQ n=1 Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=Q74ER2_GEOSL
Tax=BJP_IG2102_Coriobacteriales_64_17
Ig3397_v2_scaffold_494_10
Serratia proteamaculans, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7567..7797)
DNA (231bp) protein (77aa)
Uncharacterized protein n=3 Tax=Serratia RepID=G0BDI6_SERSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABV40422.1}; TaxID=399741 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia proteamaculans (strain 568).;"
Ig3397_v2_scaffold_494_11
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7915..8835
DNA (921bp) protein (307aa)
Radical SAM domain protein id=4418586 bin=GWC2_Syntrophus__56_31 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_53_10_curated
Ig3397_v2_scaffold_494_12
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

8895..10241
DNA (1347bp) protein (449aa)
Hypothetical conserved protein n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SG61_9BACT
Hypothetical conserved protein {ECO:0000313|EMBL:BAL55147.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
hypothetical protein
Ig3397_v2_scaffold_494_13
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10382..12367
DNA (1986bp) protein (662aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DZS4_9GAMM
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:EGV31963.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
signal transduction histidine kinase
Ig3397_v2_scaffold_494_14
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(12381..13673)
DNA (1293bp) protein (431aa)
PAS domain S-box n=1 Tax=Desulfovibrio africanus PCS RepID=M5PS91_DESAF
PAS/PAC sensor hybrid histidine kinase
Tax=BJP_IG2102_Coriobacteriales_64_17
Ig3397_v2_scaffold_494_15
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13657..14823)
DNA (1167bp) protein (389aa)
Iron-containing alcohol dehydrogenase n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E2E1_GEOLS rbh
iron-containing alcohol dehydrogenase rbh
Iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:ACD94194.1}; TaxID=398767 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
Ig3397_v2_scaffold_494_16
unknown

Not on your lists

comp(14905..15357)
DNA (453bp) protein (151aa)

This feature has no annotations

Ig3397_v2_scaffold_494_17
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(15443..16522)
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Photobacterium profundum RepID=Q6LG81_PHOPR
hypothetical protein
Tax=BJP_08E140C01_Coriobacteriales_62_12
Ig3397_v2_scaffold_494_18
Syntrophothermus lipocalidus, Syntrophothermus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16616..17593)
DNA (978bp) protein (326aa)
membrane dipeptidase (EC:3.4.13.19); K01273 membrane dipeptidase [EC:3.4.13.19]
Membrane dipeptidase {ECO:0000313|EMBL:ADI01833.1}; EC=3.4.13.19 {ECO:0000313|EMBL:ADI01833.1};; TaxID=643648 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophothermus.;" source="Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1).;"
Membrane dipeptidase n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CM98_SYNLT
Ig3397_v2_scaffold_494_19
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17684..18757
DNA (1074bp) protein (358aa)
response regulator receiver modulated CheB methylesterase; K03412 two-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61]
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=868595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 /; CO-1-SRB).;"
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 / CO-1-SRB) RepID=F6B8B2_DESCC
Ig3397_v2_scaffold_494_20
GWB2_Planctomycetes_41_19_curated, Brocadiales, Planctomycetes, Bacteria

Not on your lists

comp(18779..21184)
DNA (2406bp) protein (802aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=2 Tax=sulfur-oxidizing symbionts RepID=G2FFM7_9GAMM
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Tax=GWB2_Planctomycetes_41_19_curated
Ig3397_v2_scaffold_494_21
RBG_19FT_COMBO_Chloroflexi_56_12_curated, Chloroflexi, Bacteria

Not on your lists

21373..22149
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) RepID=Q9RTJ9_DEIRA
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_56_12_curated
Ig3397_v2_scaffold_494_22
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22198..22560)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QLW3_RALPI
Uncharacterized protein {ECO:0000313|EMBL:AGW91974.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
hypothetical protein
Ig3397_v2_scaffold_494_23
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(22618..23727)
DNA (1110bp) protein (370aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-602-C20 RepID=UPI00037AC931
superfamily I DNA/RNA helicase
Tax=BJP_08E140C01_Coriobacteriales_62_12
Ig3397_v2_scaffold_494_24
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(23843..25198)
DNA (1356bp) protein (452aa)
Tax=BJP_IG2102_Coriobacteriales_64_17
Ig3397_v2_scaffold_494_25
unknown

Not on your lists

comp(25361..25552)
DNA (192bp) protein (64aa)

This feature has no annotations

Ig3397_v2_scaffold_494_26
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(25673..26278)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EJW5_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CCF84977.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
Ig3397_v2_scaffold_494_27
Sulfuricurvum sp. PC08-66, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26439..27065)
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Kurthia sp. JC8E RepID=UPI000287C166
Uncharacterized protein {ECO:0000313|EMBL:KIM10842.1}; TaxID=1539066 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Sulfuricurvum sp. PC08-66.;"
hypothetical protein
Ig3397_v2_scaffold_494_28
Prevotella baroniae, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27269..28615
DNA (1347bp) protein (449aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=1115809 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella baroniae F0067.;"
DNA (cytosine-5-)-methyltransferase (EC:2.1.1.37); K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37] rbh
Cytosine-specific methyltransferase n=1 Tax=Prevotella baroniae F0067 RepID=U2QC80_9BACT rbh
Ig3397_v2_scaffold_494_29
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

28675..29049
DNA (375bp) protein (125aa)
DNA mismatch endonuclease Vsr; K07458 DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
Fis family transcriptional regulator n=1 Tax=Coriobacteriaceae RepID=UPI00034AC580
Uncharacterized protein {ECO:0000313|EMBL:CDD38937.1}; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:398.;"
Ig3397_v2_scaffold_494_30
Synechococcus sp. PCC 7502, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

29109..30224
DNA (1116bp) protein (372aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=1173263 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. PCC 7502.;"
Cytosine-specific methyltransferase n=1 Tax=Synechococcus sp. PCC 7502 RepID=K9SVA4_9SYNE rbh
DNA-methyltransferase Dcm rbh
Displaying items 1-30 of 53 in total

View Taxonomy