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Ig3397_v2_scaffold_2298

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_2298_1
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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1..432
DNA (432bp) protein (144aa)
truB; tRNA pseudouridine synthase B (EC:5.4.99.-); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B id=3272078 bin=GWB1_CP_36_13 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2298_2
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

572..1225
DNA (654bp) protein (218aa)
id=3960352 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2298_3
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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comp(1298..2362)
DNA (1065bp) protein (355aa)
fabH; 3-oxoacyl-ACP synthase; K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
3-oxoacyl-(Acyl-carrier-protein) synthase III id=2622723 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2298_4
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(2611..3366)
DNA (756bp) protein (252aa)
enoyl-(acyl carrier protein) reductase (EC:1.3.1.9); K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9]
Enoyl-[acyl-carrier-protein] reductase [NADH] id=3471269 bin=GWB1_CP_36_13 species=Nautilia profundicola genus=Nautilia taxon_order=Nautiliales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2298_5
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(3377..4135)
DNA (759bp) protein (253aa)
enoyl-(acyl carrier protein) reductase; K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9]
Enoyl-[acyl-carrier-protein] reductase [NADH] id=3471267 bin=GWB1_CP_36_13 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2298_6
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(4490..5509)
DNA (1020bp) protein (340aa)
phenylalanyl-tRNA synthetase, alpha subunit; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase alpha subunit id=4012100 bin=GWB1_CP_36_13 species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2298_7
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(5527..5886)
DNA (360bp) protein (120aa)
50S ribosomal protein L20 id=4012101 bin=GWB1_CP_36_13 species=Saprospira grandis genus=Saprospira taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2298_8
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(5922..6122)
DNA (201bp) protein (67aa)
50S ribosomal protein L35 id=4012102 bin=GWB1_CP_36_13 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2298_9
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(6159..6590)
DNA (432bp) protein (144aa)
Translation initiation factor IF-3 id=4012103 bin=GWB1_CP_36_13 species=Micavibrio aeruginosavorus genus=Micavibrio taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
translation initiation factor IF-3; K02520 translation initiation factor IF-3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2298_10
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(6707..7888)
DNA (1182bp) protein (394aa)
id=4012104 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2298_11
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(7875..9254)
DNA (1380bp) protein (460aa)
Outer membrane efflux protein id=3747165 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
efflux pump, RND family, outer membrane protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2298_12
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

9376..10797
DNA (1422bp) protein (474aa)
RNA methylase, NOL1/NOP2/sun family (EC:2.1.1.29)
NOL1/NOP2/sun family RNA methylase id=3747166 bin=GWB1_CP_36_13 species=Clostridiaceae bacterium L21-TH-D2 genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2298_13
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

11040..12455
DNA (1416bp) protein (472aa)
glutamine synthetase, type I; K01915 glutamine synthetase [EC:6.3.1.2]
Glutamine synthetase id=2686582 bin=GWB1_CP_36_13 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2298_14
unknown

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comp(12623..12718)
DNA (96bp) protein (32aa)

This feature has no annotations

Displaying 14 items

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