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Ig3397_v2_scaffold_2364

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_2364_1
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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comp(1..372)
DNA (372bp) protein (124aa)
SpoIID/LytB domain protein id=3604212 bin=GWB1_CP_36_13 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2364_2
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(438..1151)
DNA (714bp) protein (238aa)
RNA polymerase sigma factor id=3630310 bin=GWB1_CP_36_13 species=unknown genus=Borrelia taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2364_3
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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1477..2277
DNA (801bp) protein (267aa)
Polysaccharide deacetylase id=3331513 bin=GWB1_CP_36_13 species=unknown genus=Fusobacterium taxon_order=Fusobacteriales taxon_class=Fusobacteriia phylum=Fusobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
polysaccharide deacetylase
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2364_4
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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2274..3161
DNA (888bp) protein (296aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein id=3823978 bin=GWB1_CP_36_13 species=Clostridium carboxidivorans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2364_5
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(3222..4076)
DNA (855bp) protein (285aa)
Formyl transferase domain protein id=3758297 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
purU; formyltetrahydrofolate deformylase
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2364_6
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(4091..4888)
DNA (798bp) protein (266aa)
phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41]
Phosphatidate cytidylyltransferase id=3758296 bin=GWB1_CP_36_13 species=Carnobacterium sp. genus=Carnobacterium taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2364_7
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(4885..5613)
DNA (729bp) protein (243aa)
uppS; undecaprenyl pyrophosphate synthase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31]
Isoprenyl transferase id=3758295 bin=GWB1_CP_36_13 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2364_8
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(5614..6180)
DNA (567bp) protein (189aa)
Ribosome-recycling factor id=3758294 bin=GWB1_CP_36_13 species=Desulfosporosinus orientis genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
ribosome recycling factor; K02838 ribosome recycling factor
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2364_9
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(6182..6937)
DNA (756bp) protein (252aa)
pyrH; uridylate kinase (EC:2.7.4.-); K09903 uridylate kinase [EC:2.7.4.22]
Uridylate kinase id=3758293 bin=GWB1_CP_36_13 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2364_10
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(6939..7778)
DNA (840bp) protein (280aa)
Elongation factor Ts id=3758292 bin=GWB1_CP_36_13 species=Clostridium butyricum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
translation elongation factor Ts; K02357 elongation factor Ts
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2364_11
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(7820..8626)
DNA (807bp) protein (269aa)
30S ribosomal protein S2 id=3758290 bin=GWB1_CP_36_13 species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2364_trna_1
unknown

Not on your lists

8821..8893
DNA (73bp)
transferRNA
Ig3397_v2_scaffold_2364_12
Methylomonas methanica, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9297..9830)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Methylomonas methanica (strain MC09) RepID=F9ZX16_METMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEF98477.1}; TaxID=857087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas methanica (strain MC09).;"
Ig3397_v2_scaffold_2364_13
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9827..10015)
DNA (189bp) protein (63aa)
Putative transcriptional regulator, CopG family n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4T449_META2
CopG family transcriptional regulator
Putative transcriptional regulator, CopG family {ECO:0000313|EMBL:CCE23784.1}; TaxID=1091494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM; B-2133 / 20Z).;"
Ig3397_v2_scaffold_2364_14
unknown

Not on your lists

comp(10226..10558)
DNA (333bp) protein (111aa)

This feature has no annotations

Ig3397_v2_scaffold_2364_15
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(10629..11453)
DNA (825bp) protein (275aa)
Putative uncharacterized protein id=3018446 bin=GWB1_CP_36_13 species=Coleofasciculus chthonoplastes genus=Coleofasciculus taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
hypothetical protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_2364_16
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(11456..12364)
DNA (909bp) protein (303aa)
Putative cell envelope biogenesis protein id=3018441 bin=GWB1_CP_36_13 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Displaying 17 items

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