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Ig3397_v2_scaffold_928

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_928_1
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

3..1298
DNA (1296bp) protein (432aa)
Uncharacterized protein id=3430910 bin=GWB1_CP_36_13 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
hypothetical protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_2
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(1364..2284)
DNA (921bp) protein (307aa)
malate dehydrogenase; K00024 malate dehydrogenase [EC:1.1.1.37]
Malate dehydrogenase id=3562846 bin=GWB1_CP_36_13 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_3
GWF1_Spirochaetes_51_8_curated, Spirochaetes, Bacteria

Not on your lists

2660..2881
DNA (222bp) protein (74aa)
Tetratricopeptide repeat protein id=2957989 bin=GWF1_Spirochaetes_51_8 species=unknown genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
hypothetical protein
Tax=GWF1_Spirochaetes_51_8_curated
Ig3397_v2_scaffold_928_4
unknown

Not on your lists

comp(2883..3446)
DNA (564bp) protein (188aa)

This feature has no annotations

Ig3397_v2_scaffold_928_5
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

3650..4612
DNA (963bp) protein (321aa)
Putative uncharacterized protein id=3758299 bin=GWB1_CP_36_13 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
radical SAM protein; K07139
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_6
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

4576..6063
DNA (1488bp) protein (496aa)
Putative uncharacterized protein id=3758300 bin=GWB1_CP_36_13 species=Treponema brennaborense genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_7
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(6050..6958)
DNA (909bp) protein (303aa)
DNA polymerase III, delta subunit id=3960353 bin=GWB1_CP_36_13 species=unknown genus=Halanaerobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_8
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(6959..7660)
DNA (702bp) protein (234aa)
tRNA/rRNA methyltransferase SpoU; K00556 tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
rRNA methylase id=2957302 bin=GWB1_CP_36_13 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_9
unknown

Not on your lists

7793..8416
DNA (624bp) protein (208aa)

This feature has no annotations

Ig3397_v2_scaffold_928_10
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

8516..9313
DNA (798bp) protein (266aa)
RNA polymerase sigma factor id=3630310 bin=GWB1_CP_36_13 species=unknown genus=Borrelia taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43); K03086 RNA polymerase primary sigma factor
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_11
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

9335..9991
DNA (657bp) protein (219aa)
Putative uncharacterized protein id=3630316 bin=GWB1_CP_36_13 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
hypothetical protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_12
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

9988..10767
DNA (780bp) protein (260aa)
id=3630321 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_13
unknown

Not on your lists

10811..11068
DNA (258bp) protein (86aa)

This feature has no annotations

Ig3397_v2_scaffold_928_14
Leptospira fainei, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

11230..12237
DNA (1008bp) protein (336aa)
Oxidoreductase, NAD-binding domain protein n=1 Tax=Leptospira fainei serovar Hurstbridge str. BUT 6 RepID=S3V128_9LEPT
Oxidoreductase, NAD-binding domain protein {ECO:0000313|EMBL:EPG76391.1}; TaxID=1193011 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira fainei serovar Hurstbridge str. BUT 6.;"
oxidoreductase, NAD-binding
Ig3397_v2_scaffold_928_15
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

12419..12712
DNA (294bp) protein (98aa)
Preprotein translocase, YajC subunit id=3388103 bin=GWB1_CP_36_13 species=unknown genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_16
unknown

Not on your lists

12717..13016
DNA (300bp) protein (100aa)

This feature has no annotations

Ig3397_v2_scaffold_928_17
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

13022..14950
DNA (1929bp) protein (643aa)
Protein translocase subunit SecD id=3388109 bin=GWB1_CP_36_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
secD; preprotein translocase subunit D; K03072 preprotein translocase subunit SecD
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_18
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

14947..15846
DNA (900bp) protein (300aa)
Protein translocase subunit SecF id=3388112 bin=GWB1_CP_36_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
protein-export membrane protein SecF; K03074 preprotein translocase subunit SecF
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_19
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

15921..17309
DNA (1389bp) protein (463aa)
manA; bifunctional mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferase (EC:2.7.7.22 5.3.1.8); K16011 mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase id=3388116 bin=GWB1_CP_36_13 species=unknown genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_20
GWB1_Spirochaetes_48_6_curated, Spirochaetes, Bacteria

Not on your lists

comp(17306..17764)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Spirochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1) RepID=F4GKT5_SPICD
hypothetical protein; K06940
Tax=GWB1_Spirochaetes_48_6_curated
Ig3397_v2_scaffold_928_21
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(17792..20713)
DNA (2922bp) protein (974aa)
Uncharacterized protein id=3848985 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_22
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(20956..23385)
DNA (2430bp) protein (810aa)
Uncharacterized protein id=3848985 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_23
CG_Delta_01, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23643..24257
DNA (615bp) protein (205aa)
DJ-1 family protein n=1 Tax=Sulfurihydrogenibium sp. (strain YO3AOP1) RepID=B2V9U4_SULSY
DJ-1 family protein; K03152 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis
Tax=CG_Delta_01
Ig3397_v2_scaffold_928_24
unknown

Not on your lists

comp(24272..24694)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Psychromonas ossibalaenae RepID=UPI00036BFBB6
Ig3397_v2_scaffold_928_25
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(24694..25491)
DNA (798bp) protein (266aa)
PolyA polymerase id=4047581 bin=GWB1_CP_36_13 species=unknown genus=Brachyspira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
polyA polymerase family protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_26
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(25492..25845)
DNA (354bp) protein (118aa)
id=4047582 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_27
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(25842..26906)
DNA (1065bp) protein (355aa)
poly-beta-hydroxybutyrate polymerase; K03821 polyhydroxyalkanoate synthase [EC:2.3.1.-]
Polyhydroxyalkanoic acid synthase id=4047583 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_928_28
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(26891..28159)
DNA (1269bp) protein (423aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] rbh
Cysteine--tRNA ligase id=4047585 bin=GWB1_CP_36_13 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Displaying 28 items

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