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Ig3397_v2_scaffold_960

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_960_1
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(3..539)
DNA (537bp) protein (179aa)
trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-]
tRNA-specific 2-thiouridylase MnmA id=3263546 bin=GWB1_CP_36_13 species=GWE2_WS6_33_161 genus=GWE2_WS6_33_161 taxon_order=GWE2_WS6_33_161 taxon_class=GWE2_WS6_33_161 phylum=WS6 tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_960_2
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(536..2293)
DNA (1758bp) protein (586aa)
DNA mismatch repair protein MutL id=3272206 bin=GWB1_CP_36_13 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
DNA mismatch repair protein MutL; K03572 DNA mismatch repair protein MutL rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_960_3
BJP_IG2069_Spirochaetales_48_31, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

2593..3594
DNA (1002bp) protein (334aa)
Tax=BJP_IG2069_Spirochaetales_48_31
Ig3397_v2_scaffold_960_4
unknown

Not on your lists

3624..4391
DNA (768bp) protein (256aa)

This feature has no annotations

Ig3397_v2_scaffold_960_5
Methanosphaerula palustris, Methanosphaerula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4454..5401
DNA (948bp) protein (316aa)
PKD domain containing protein n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GF92_METPE
PKD domain-containing protein
PKD domain containing protein {ECO:0000313|EMBL:ACL17898.1}; Flags: Precursor;; TaxID=521011 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanosphaerula.;" source="Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c).;"
Ig3397_v2_scaffold_960_6
unknown

Not on your lists

5405..6484
DNA (1080bp) protein (360aa)

This feature has no annotations

Ig3397_v2_scaffold_960_7
unknown

Not on your lists

comp(6546..7487)
DNA (942bp) protein (314aa)

This feature has no annotations

Ig3397_v2_scaffold_960_8
Chlorobaculum parvum, Chlorobaculum, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(7496..8401)
DNA (906bp) protein (302aa)
Putative transmembrane protein n=1 Tax=Chlorobaculum parvum (strain NCIB 8327) RepID=B3QQV6_CHLP8
transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:ACF10734.1}; TaxID=517417 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobaculum.;" source="Chlorobaculum parvum (strain NCIB 8327) (Chlorobium vibrioforme subsp.; thiosulfatophilum (strain DSM 263 / NCIB 8327)).;"
Ig3397_v2_scaffold_960_9
unknown

Not on your lists

8679..9029
DNA (351bp) protein (117aa)

This feature has no annotations

Ig3397_v2_scaffold_960_10
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

9170..11695
DNA (2526bp) protein (842aa)
Putative uncharacterized protein id=3258418 bin=GWB1_CP_36_13 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
hypothetical protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_960_11
unknown

Not on your lists

11731..11940
DNA (210bp) protein (70aa)

This feature has no annotations

Ig3397_v2_scaffold_960_12
GWE2_Spirochaetes_31_10_curated, Spirochaetes, Bacteria

Not on your lists

comp(11869..13071)
DNA (1203bp) protein (401aa)
ATPase-like, ParA/MinD id=1928037 bin=GWE2_Spirochaete_31_10 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWE2_Spirochaete_31_10 organism_group=Spirochaetes organism_desc=Good + rbh
ParA/MinD ATPase-like protein rbh
Tax=GWE2_Spirochaetes_31_10_curated
Ig3397_v2_scaffold_960_13
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13086..13412)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LQF8_DESBD
Uncharacterized protein {ECO:0000313|EMBL:KDR96105.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
hypothetical protein
Ig3397_v2_scaffold_960_14
GWE2_Spirochaetes_31_10_curated, Spirochaetes, Bacteria

Not on your lists

comp(13384..14289)
DNA (906bp) protein (302aa)
Cobyrinic acid ac-diamide synthase id=1260922 bin=GWE1_Spirochaetes_32_154 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_Spirochaetes_32_154 organism_group=Spirochaetes
P-loop ATPase, MinD superfamily
Tax=GWE2_Spirochaetes_31_10_curated
Ig3397_v2_scaffold_960_15
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(14286..15134)
DNA (849bp) protein (283aa)
Iron sulfur cluster/nucleotide binding domain protein n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BXS9_METCG
iron sulfur cluster/nucleotide binding domain-containing protein
Iron sulfur cluster/nucleotide binding domain protein {ECO:0000313|EMBL:AEB67513.1}; TaxID=990316 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC; 103675 / OCM 69 / GP-6) (Methanothrix concilii).;"
Ig3397_v2_scaffold_960_16
RIFOXYB1_FULL_OP11_Gottesmanbacteria_47_11_curated, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(15138..15437)
DNA (300bp) protein (100aa)
Putative cytoplasmic protein n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CK12_SYNLT
hypothetical protein
Tax=RIFOXYB1_FULL_OP11_Gottesmanbacteria_47_11_curated
Ig3397_v2_scaffold_960_17
Pyrococcus furiosus, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(15584..16240)
DNA (657bp) protein (219aa)
Uncharacterized protein n=2 Tax=Pyrococcus furiosus RepID=I6UQ40_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAL81299.1}; TaxID=186497 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1).;"
Ig3397_v2_scaffold_960_18
bacterium UASB270, Bacteria

Not on your lists

comp(16273..16572)
DNA (300bp) protein (100aa)
DnaJ-class molecular chaperone with C-terminal Zn finger domain n=1 Tax=Desulfobacter postgatei 2ac9 RepID=I5B0Y7_9DELT
Heat shock protein DnaJ domain protein {ECO:0000313|EMBL:GAK56830.1}; TaxID=1499967 species="Bacteria.;" source="bacterium UASB270.;"
Ig3397_v2_scaffold_960_19
BJP_IG2069_Spirochaetales_48_31, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(17395..17652)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8EZS5_SPICH
hypothetical protein; K06940
Tax=BJP_IG2069_Spirochaetales_48_31
Ig3397_v2_scaffold_960_20
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

17836..18324
DNA (489bp) protein (163aa)
SEC-C motif domain-containing protein; K09858 SEC-C motif domain protein
SEC-C motif domain protein id=3397760 bin=GWF2_Lentisphaerae_52_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
Tax=GWC2_Nitrospirae_57_9_curated
Ig3397_v2_scaffold_960_21
Deinococcus peraridilitoris, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(18335..20014)
DNA (1680bp) protein (560aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200) RepID=K9ZZ13_DEIPD
diguanylate cyclase
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AFZ66836.1}; TaxID=937777 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416; / KR-200).;"
Ig3397_v2_scaffold_960_22
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(20214..20429)
DNA (216bp) protein (72aa)
id=4084019 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_960_23
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(20443..20751)
DNA (309bp) protein (103aa)
Stage II sporulation protein id=4084017 bin=GWB1_CP_36_13 species=Anaerococcus vaginalis genus=Anaerococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_960_24
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(20753..21199)
DNA (447bp) protein (149aa)
Putative uncharacterized protein id=4084016 bin=GWB1_CP_36_13 species=Reinekea blandensis genus=Reinekea taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_960_25
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(21190..22077)
DNA (888bp) protein (296aa)
Methionine biosynthesis protein MetW-like protein id=4084015 bin=GWB1_CP_36_13 species=unknown genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
methylase/methyltransferase
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_960_26
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(22064..24391)
DNA (2328bp) protein (776aa)
Glycosyl transferase family 51 id=4083987 bin=GWB1_CP_36_13 species=Turneriella parva genus=Turneriella taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
glycosyl transferase family 51 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_960_27
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(24393..24713)
DNA (321bp) protein (107aa)
thioredoxin (EC:1.8.1.8)
Thioredoxin id=3550810 bin=GWB1_CP_36_13 species=Lachnospiraceae bacterium 2_1_46FAA genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_960_28
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(24884..25678)
DNA (795bp) protein (265aa)
Uncharacterized protein id=4058625 bin=GWB1_CP_36_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
hypothetical protein; K02066 putative ABC transport system permease protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_960_29
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(25744..26976)
DNA (1233bp) protein (411aa)
NhaP-type Na+(K+)/H+ antiporter id=3515474 bin=GWB1_CP_36_13 species=Sphaerochaeta pleomorpha genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
NhaP-type Na+(K+)/H+ antiporter rbh
Tax=GWB1_Spirochaetes_36_13_curated
Displaying 29 items

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