ggKbase home page

Ig3397_v2_scaffold_1060

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_1060_1
unknown

Not on your lists

401..724
DNA (324bp) protein (108aa)

This feature has no annotations

Ig3397_v2_scaffold_1060_2
BJP_IG2069_Spirochaetales_48_31, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

725..2416
DNA (1692bp) protein (564aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00359 NADH oxidase [EC:1.6.-.-]
FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=Desulfohalobium retbaense (strain DSM 5692) RepID=C8X541_DESRD
Tax=BJP_IG2069_Spirochaetales_48_31
Ig3397_v2_scaffold_1060_3
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

2580..3758
DNA (1179bp) protein (393aa)
Peptidase C11 clostripain id=3331381 bin=GWB1_CP_36_13 species=Oscillatoria nigro-viridis genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1060_4
RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3997..4407
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI000380FE5C
hemerythrin-like metal-binding protein; K03406 methyl-accepting chemotaxis protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated
Ig3397_v2_scaffold_1060_5
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

4635..4970
DNA (336bp) protein (112aa)
STAS domain protein id=3331377 bin=GWB1_CP_36_13 species=unknown genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
anti-sigma-factor antagonist
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1060_6
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(5128..7176)
DNA (2049bp) protein (683aa)
ATP-dependent DNA helicase RecG id=3263552 bin=GWB1_CP_36_13 species=Dictyoglomus thermophilum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
ATP-dependent DNA helicase RecG
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1060_7
unknown

Not on your lists

7263..7976
DNA (714bp) protein (238aa)

This feature has no annotations

Ig3397_v2_scaffold_1060_8
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

8197..8556
DNA (360bp) protein (120aa)
STAS domain protein id=3263555 bin=GWB1_CP_36_13 species=unknown genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
anti-anti-sigma factor
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1060_9
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

8585..9460
DNA (876bp) protein (292aa)
id=3263556 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1060_10
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

9470..10540
DNA (1071bp) protein (357aa)
prephenate dehydratase; K14170 chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] rbh
P-protein id=3721095 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1060_11
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

10540..11703
DNA (1164bp) protein (388aa)
1,2-diacylglycerol 3-glucosyltransferase id=3188192 bin=GWB1_CP_36_13 species=Methanosarcina acetivorans genus=Methanosarcina taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
1,2-diacylglycerol 3-glucosyltransferase rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1060_12
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11685..12185)
DNA (501bp) protein (167aa)
Acetyltransferase family protein n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MCL3_9EURY
acetyltransferase family protein
Acetyltransferase family protein {ECO:0000313|EMBL:AFV23207.1}; TaxID=1094980 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus psychrophilus R15.;"
Ig3397_v2_scaffold_1060_trna_1
unknown

Not on your lists

12279..12351
DNA (73bp)
transferRNA
Ig3397_v2_scaffold_1060_13
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

12512..12919
DNA (408bp) protein (136aa)
id=3336470 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1060_14
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

12966..13451
DNA (486bp) protein (162aa)
id=3336472 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1060_15
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

13454..15223
DNA (1770bp) protein (590aa)
Putative uncharacterized protein id=3336475 bin=GWB1_CP_36_13 species=Marivirga tractuosa genus=Marivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
hypothetical protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1060_16
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

15231..16016
DNA (786bp) protein (262aa)
MscS family inner membrane protein YnaI id=3336480 bin=GWB1_CP_36_13 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
MscS mechanosensitive ion channel
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1060_17
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

Not on your lists

comp(16131..17156)
DNA (1026bp) protein (342aa)
hypothetical protein Lbro5_01080 id=3013942 bin=GWF1_Spirochaetes_60_12 species=Leptospira broomii genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes
copper amine oxidase domain-containing protein
Tax=GWB1_Spirochaetes_60_80_curated
Ig3397_v2_scaffold_1060_18
RBG_16_Ignavibacteria_35_7_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(17297..17572)
DNA (276bp) protein (92aa)
Transcriptional regulator, XRE family id=3352604 bin=GWF2_Ignavibacteria_35_20 species=unknown genus=unknown taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
Xre family transcriptional regulator
Tax=RBG_16_Ignavibacteria_35_7_curated
Ig3397_v2_scaffold_1060_19
BJP_IG2069_Spirochaetales_48_31, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(17565..17921)
DNA (357bp) protein (119aa)
Genome sequencing data, contig C287 (Modular protein) id=1716816 bin=GWB2_Pelobacter_53_15 species=Microcystis aeruginosa genus=Microcystis taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=BJP_IG2069_Spirochaetales_48_31
Ig3397_v2_scaffold_1060_20
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(18314..18598)
DNA (285bp) protein (95aa)
Putative uncharacterized protein id=2622869 bin=GWB1_CP_36_13 species=Leptospira borgpetersenii genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
hypothetical protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1060_21
BJP_IG2069_Spirochaetales_48_31, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(18585..18974)
DNA (390bp) protein (130aa)
Gp49-like PF05973 family protein n=1 Tax=Leptospira terpstrae serovar Hualin str. LT 11-33 = ATCC 700639 RepID=N1VX64_9LEPT
hypothetical protein
Tax=BJP_IG2069_Spirochaetales_48_31
Ig3397_v2_scaffold_1060_22
R_RIF_OD1_12_45_17b, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(19224..20132)
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=filamentous cyanobacterium ESFC-1 RepID=UPI0003742B73
restriction endonuclease; K07448 restriction system protein rbh
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_12_45_17b_curated
Ig3397_v2_scaffold_1060_23
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(20545..21153)
DNA (609bp) protein (203aa)
id=3229142 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1060_24
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(21140..21364)
DNA (225bp) protein (75aa)
id=3229144 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1060_25
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

21601..22461
DNA (861bp) protein (287aa)
Stage 0 sporulation protein J id=3229145 bin=GWB1_CP_36_13 species=Clostridium perfringens genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
partition protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1060_26
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

22516..23766
DNA (1251bp) protein (417aa)
Permease YjgP/YjgQ family protein id=3229149 bin=GWB1_CP_36_13 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
hypothetical protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1060_27
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(23775..24284)
DNA (510bp) protein (170aa)
id=3680809 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Displaying 28 items

View Taxonomy