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Ig3397_v2_scaffold_1112

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_1112_1
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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1..786
DNA (786bp) protein (262aa)
Putative uncharacterized protein id=3072656 bin=GWB1_CP_36_13 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1112_2
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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797..1396
DNA (600bp) protein (200aa)
id=3072659 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1112_3
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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1398..1871
DNA (474bp) protein (158aa)
id=3072660 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1112_4
Pelosinus sp. UFO1, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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1875..2693
DNA (819bp) protein (273aa)
Nitroreductase n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7W729_DESOD
Nitroreductase {ECO:0000313|EMBL:AIF53968.1}; TaxID=484770 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus sp. UFO1.;"
nitroreductase
Ig3397_v2_scaffold_1112_5
unknown

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2702..4855
DNA (2154bp) protein (718aa)

This feature has no annotations

Ig3397_v2_scaffold_1112_6
Fusarium oxysporum, Fusarium, Hypocreales, Hypocreomycetidae, Ascomycota, Fungi

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4947..5726
DNA (780bp) protein (260aa)
hypothetical protein; K08803 death-associated protein kinase [EC:2.7.11.1]
Uncharacterized protein n=1 Tax=Fusarium oxysporum f. sp. lycopersici (strain 4287 / CBS 123668 / FGSC 9935 / NRRL 34936) RepID=J9NR48_FUSO4
Uncharacterized protein {ECO:0000313|EnsemblFungi:FOXG_17677P0}; TaxID=426428 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae; Fusarium; Fusarium oxysporum species complex.;" source="Fusarium oxysporum f. sp. lycopersici (strain 4287 / CBS 123668 / FGSC; 9935 / NRRL 34936) (Fusarium vascular wilt of tomato).;"
Ig3397_v2_scaffold_1112_7
RBG_13_WOR_3_43_14_curated, WOR-3, Bacteria

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5728..6279
DNA (552bp) protein (184aa)
Tax=RBG_13_WOR_3_43_14_curated
Ig3397_v2_scaffold_1112_8
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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6307..6879
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Paenibacillus massiliensis RepID=UPI00036FA61B
RDD domain-containing protein {ECO:0000313|EMBL:EHQ52448.1}; TaxID=519989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothiorhodospira sp. PHS-1.;"
hypothetical protein
Ig3397_v2_scaffold_1112_9
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

6909..8072
DNA (1164bp) protein (388aa)
hypothetical protein; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] id=24610086 bin=RAAC11 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP rbh
hypothetical protein; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
Ig3397_v2_scaffold_1112_10
unknown

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8233..8505
DNA (273bp) protein (91aa)

This feature has no annotations

Ig3397_v2_scaffold_1112_11
GWC1_Treponema_61_84_curated, Spirochaetes, Bacteria

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comp(8511..8810)
DNA (300bp) protein (100aa)
Toxin-antitoxin system, toxin component n=1 Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0G066_9DELT
plasmid stabilization system
Tax=GWC1_Treponema_61_84_curated
Ig3397_v2_scaffold_1112_12
CG_Epsilon_01, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8800..9099)
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=1 Tax=Treponema saccharophilum DSM 2985 RepID=H7EPQ4_9SPIO
Phd_YefM
Tax=CG_Epsilon_01
Ig3397_v2_scaffold_1112_13
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(9335..9685)
DNA (351bp) protein (117aa)
Uncharacterized protein n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SB98_LEPBA
hypothetical protein
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Ig3397_v2_scaffold_1112_14
unknown

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comp(9770..9928)
DNA (159bp) protein (53aa)

This feature has no annotations

Ig3397_v2_scaffold_1112_15
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

10169..10978
DNA (810bp) protein (270aa)
Flagellar basal-body rod protein FlgG id=2622879 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
flgG; flagellar basal-body rod protein FlgG; K02392 flagellar basal-body rod protein FlgG
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1112_16
unknown

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11028..11741
DNA (714bp) protein (238aa)

This feature has no annotations

Ig3397_v2_scaffold_1112_17
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

11961..12662
DNA (702bp) protein (234aa)
Late competence development protein ComFB id=3758301 bin=GWB1_CP_36_13 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Late competence development protein ComFB; K02241 competence protein ComFB
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1112_18
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

12712..13611
DNA (900bp) protein (300aa)
Peptidase M23B id=3336529 bin=GWB1_CP_36_13 species=Fusobacterium varium genus=Fusobacterium taxon_order=Fusobacteriales taxon_class=Fusobacteriia phylum=Fusobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
peptidase, M23/M37 family
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1112_19
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(13672..15159)
DNA (1488bp) protein (496aa)
lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Lysine--tRNA ligase id=3703648 bin=GWB1_CP_36_13 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1112_20
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

15435..15944
DNA (510bp) protein (170aa)
Transcription factor id=2535571 bin=GWB1_CP_36_13 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
CarD family transcriptional regulator; K07736 CarD family transcriptional regulator
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1112_21
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

16393..17478
DNA (1086bp) protein (362aa)
serC; phosphoserine aminotransferase; K00831 phosphoserine aminotransferase [EC:2.6.1.52]
Phosphoserine aminotransferase id=3679468 bin=GWB1_CP_36_13 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1112_22
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

17490..18659
DNA (1170bp) protein (390aa)
D-isomer specific 2-hydroxyacid dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] rbh
Phosphoglycerate dehydrogenase-like oxidoreductase id=3679470 bin=GWB1_CP_36_13 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1112_23
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

18749..19981
DNA (1233bp) protein (411aa)
LL-diaminopimelate aminotransferase (EC:2.6.1.83); K10206 LL-diaminopimelate aminotransferase [EC:2.6.1.83]
LL-diaminopimelate aminotransferase id=3065154 bin=GWC2_Nitrospirae-rel_56_14 species=Methanothermococcus okinawensis genus=Methanothermococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA rbh
Tax=GWC2_Nitrospirae_57_9_curated
Ig3397_v2_scaffold_1112_24
unknown

Not on your lists

20357..20845
DNA (489bp) protein (163aa)

This feature has no annotations

Ig3397_v2_scaffold_1112_25
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

20885..21412
DNA (528bp) protein (176aa)
Ribosome maturation factor RimM id=2623078 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
16S rRNA processing protein RimM; K02860 16S rRNA processing protein RimM
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1112_26
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

21416..22162
DNA (747bp) protein (249aa)
tRNA (Guanine37-N(1)-) methyltransferase; K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
tRNA (guanine-N(1)-)-methyltransferase id=2623079 bin=GWB1_CP_36_13 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1112_27
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


22152..22508
DNA (357bp) protein (119aa)
50S ribosomal protein L19 id=2623080 bin=GWB1_CP_36_13 species=unknown genus=Roseburia taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1112_28
GWE2_Spirochaetes_31_10_curated, Spirochaetes, Bacteria

Not on your lists

22876..23634
DNA (759bp) protein (253aa)
RimK domain protein ATP-grasp id=1296241 bin=GWE1_Spirochaetes_32_154 species=Marivirga tractuosa genus=Marivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE1_Spirochaetes_32_154 organism_group=Spirochaetes
rimk domain protein ATP-grasp
Tax=GWE2_Spirochaetes_31_10_curated
Displaying 28 items

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