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Ig3397_v2_scaffold_1118

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_1118_1
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(67..957)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Microbulbifer variabilis RepID=UPI000382E6F9
GumN family protein; K09973 hypothetical protein
Tax=RBG_13_Nitrospirae_41_22_curated
Ig3397_v2_scaffold_1118_2
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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1359..2381
DNA (1023bp) protein (341aa)
id=3939098 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1118_3
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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2399..3130
DNA (732bp) protein (244aa)
id=3976513 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1118_4
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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comp(3169..4743)
DNA (1575bp) protein (525aa)
Nif-specific regulatory protein id=4058701 bin=GWB1_CP_36_13 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Nif-specific regulatory protein rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1118_5
Desulfovibrio alkalitolerans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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5137..5964
DNA (828bp) protein (276aa)
nitrogenase iron protein; K02588 nitrogenase iron protein NifH [EC:1.18.6.1] rbh
Nitrogenase iron protein {ECO:0000256|HAMAP-Rule:MF_00533}; EC=1.18.6.1 {ECO:0000256|HAMAP-Rule:MF_00533};; Nitrogenase Fe protein {ECO:0000256|HAMAP-Rule:MF_00533}; Nitrogenase component II {ECO:0000256|HAMAP-Rule:MF_00533}; Nitrogenase reductase {ECO:0000256|HAMAP-Rule:MF_00533}; TaxID=1121439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alkalitolerans DSM 16529.;"
Nitrogenase iron protein n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7UEV5_9DELT rbh
Ig3397_v2_scaffold_1118_6
Desulfovibrio vulgaris, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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5985..6344
DNA (360bp) protein (120aa)
Nitrogen regulatory protein P-II n=1 Tax=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) RepID=B8DR75_DESVM
nitrogen regulatory protein P-II; K02589 nitrogen regulatory protein PII 1
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:ACL09553.1}; TaxID=883 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637).;"
Ig3397_v2_scaffold_1118_7
GWD1_Spirochaetes_27_9_curated, Spirochaetes, Bacteria

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6341..6730
DNA (390bp) protein (130aa)
Transcriptional regulatory protein n=1 Tax=Spirochaeta thermophila (strain ATCC 49972 / DSM 6192 / RI 19.B1) RepID=E0RPD0_SPITD
transcriptional regulatory protein; K02590 nitrogen regulatory protein PII 2
Tax=GWD1_Spirochaetes_27_9_curated
Ig3397_v2_scaffold_1118_8
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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6735..8366
DNA (1632bp) protein (544aa)
nitrogenase molybdenum-iron protein alpha chain (EC:1.18.6.1); K02586 nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1] rbh
Nitrogenase protein alpha chain id=3471380 bin=GWB1_CP_36_13 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1118_9
Chlorobium phaeobacteroides, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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8394..9779
DNA (1386bp) protein (462aa)
nitrogenase molybdenum-iron protein subunit beta (EC:1.18.6.1); K02591 nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1] rbh
Mo-nitrogenase MoFe protein subunit NifK {ECO:0000313|EMBL:ABL64793.1}; EC=1.18.6.1 {ECO:0000313|EMBL:ABL64793.1};; TaxID=290317 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium phaeobacteroides (strain DSM 266).;"
Mo-nitrogenase MoFe protein subunit NifK n=1 Tax=Chlorobium phaeobacteroides (strain DSM 266) RepID=A1BEG6_CHLPD rbh
Ig3397_v2_scaffold_1118_10
Pelodictyon phaeoclathratiforme, Pelodictyon, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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9806..11155
DNA (1350bp) protein (450aa)
nitrogenase MoFe cofactor biosynthesis protein NifE (EC:1.18.6.1); K02587 nitrogenase molybdenum-cofactor synthesis protein NifE rbh
Nitrogenase MoFe cofactor biosynthesis protein NifE {ECO:0000313|EMBL:ACF44170.1}; EC=1.18.6.1 {ECO:0000313|EMBL:ACF44170.1};; TaxID=324925 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Pelodictyon.;" source="Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1).;"
Nitrogenase MoFe cofactor biosynthesis protein NifE n=1 Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SC64_PELPB rbh
Ig3397_v2_scaffold_1118_11
Chlorobium phaeovibrioides, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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11157..12527
DNA (1371bp) protein (457aa)
nitrogenase (EC:1.18.6.1); K02592 nitrogenase molybdenum-iron protein NifN rbh
Nitrogenase {ECO:0000313|EMBL:ABP37361.1}; EC=1.18.6.1 {ECO:0000313|EMBL:ABP37361.1};; TaxID=290318 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Prosthecochloris vibrioformis (strain DSM 265) (Chlorobium vibrioforme; subsp. thiosulfatophilum (strain DSM 265)) (Chlorobium phaeovibrioides; (strain DSM 265)).;"
Nitrogenase n=1 Tax=Prosthecochloris vibrioformis (strain DSM 265) RepID=A4SFV2_PROVI rbh
Ig3397_v2_scaffold_1118_12
bacterium UASB14, Bacteria

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12551..13807
DNA (1257bp) protein (419aa)
Nitrogenase cofactor biosynthesis protein NifB n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IU62_9PORP
Nitrogenase cofactor biosynthesis protein NifB {ECO:0000313|EMBL:GAK52439.1}; TaxID=1499966 species="Bacteria.;" source="bacterium UASB14.;"
nitrogenase cofactor biosynthesis protein NifB; K02585 nitrogen fixation protein NifB rbh
Ig3397_v2_scaffold_1118_13
bacterium UASB14, Bacteria

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13845..14156
DNA (312bp) protein (104aa)
Ferredoxin, 2Fe-2S n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QXW3_CHLT3
Thx protein {ECO:0000313|EMBL:GAK52438.1}; TaxID=1499966 species="Bacteria.;" source="bacterium UASB14.;"
ferredoxin, 2Fe-2S
Ig3397_v2_scaffold_1118_14
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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14189..14662
DNA (474bp) protein (158aa)
Putative acetyltransferase id=3471356 bin=GWB1_CP_36_13 species=Sphingomonas sp. LH128 genus=Sphingomonas taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
hypothetical protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1118_15
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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15041..15823
DNA (783bp) protein (261aa)
Molybdenum ABC transporter, periplasmic molybdate-binding protein id=3471939 bin=GWF2_Planctomycetes_42_9 species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA {ECO:0000313|EMBL:GAL84367.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
molybdenum ABC transporter substrate-binding protein; K02020 molybdate transport system substrate-binding protein
Ig3397_v2_scaffold_1118_16
Persephonella marina, Persephonella, Aquificales, Aquificae, Aquificae, Bacteria

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15836..16237
DNA (402bp) protein (134aa)
Putative tobe domain protein n=1 Tax=Persephonella marina (strain DSM 14350 / EX-H1) RepID=C0QSN2_PERMH
tobe domain protein
Putative tobe domain protein {ECO:0000313|EMBL:ACO03948.1}; TaxID=123214 species="Bacteria; Aquificae; Aquificales; Hydrogenothermaceae; Persephonella.;" source="Persephonella marina (strain DSM 14350 / EX-H1).;"
Ig3397_v2_scaffold_1118_17
uncultured gamma proteobacterium, Gammaproteobacteria, Proteobacteria, Bacteria

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16263..16934
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI00037E4CEC
Molybdate transport system permease protein {ECO:0000313|EMBL:BAL54440.1}; TaxID=86473 species="Bacteria; Proteobacteria; Gammaproteobacteria; environmental samples.;" source="uncultured gamma proteobacterium.;"
molybdenum transport system permease; K02018 molybdate transport system permease protein
Ig3397_v2_scaffold_1118_18
Flavobacterium sp. EM1321, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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16936..17823
DNA (888bp) protein (296aa)
ABC transporter-like protein; K02017 molybdate transport system ATP-binding protein [EC:3.6.3.29]
ABC transporter related protein n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W1M9_DESIS
Uncharacterized protein {ECO:0000313|EMBL:KDN55087.1}; TaxID=1492738 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1321.;"
Ig3397_v2_scaffold_1118_19
Ilyobacter polytropus, Ilyobacter, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

17838..18920
DNA (1083bp) protein (361aa)
pyruvate carboxyltransferase; K02594 homocitrate synthase NifV [EC:2.3.3.14]
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI00037E5725
Pyruvate carboxyltransferase {ECO:0000313|EMBL:ADO83179.1}; TaxID=572544 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Ilyobacter.;" source="Ilyobacter polytropus (strain DSM 2926 / CuHBu1).;"
Ig3397_v2_scaffold_1118_20
RIFOXYB2_FULL_Elusimicrobia_49_7_curated, Elusimicrobia, Bacteria

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19023..19661
DNA (639bp) protein (213aa)
Putative uncharacterized protein id=4406323 bin=GWF2_Bacteroidetes_33_16 species=Mucilaginibacter paludis genus=Mucilaginibacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_16 organism_group=Bacteroidetes organism_desc=Good
hypothetical protein
Tax=RIFOXYB2_FULL_Elusimicrobia_49_7_curated
Ig3397_v2_scaffold_1118_trna_1
unknown

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19884..19969
DNA (86bp)
transferRNA
Ig3397_v2_scaffold_1118_21
unknown

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20002..20466
DNA (465bp) protein (155aa)

This feature has no annotations

Ig3397_v2_scaffold_1118_22
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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20580..22451
DNA (1872bp) protein (624aa)
Stage II sporulation protein E id=2807528 bin=GWB1_CP_36_13 species=unknown genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
serine/threonine kinase protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1118_23
unknown

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22553..22846
DNA (294bp) protein (98aa)

This feature has no annotations

Ig3397_v2_scaffold_1118_24
Desulfobacterium autotrophicum, Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(22864..23193)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI0003805346
dksA2; DksA2; K06204 DnaK suppressor protein
DksA2 {ECO:0000313|EMBL:ACN13857.1}; TaxID=177437 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium.;" source="Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2).;"
Ig3397_v2_scaffold_1118_25
unknown

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23337..23486
DNA (150bp) protein (50aa)

This feature has no annotations

Displaying 26 items

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