ggKbase home page

Ig3397_v2_scaffold_1649

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_1649_1
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

1..765
DNA (765bp) protein (255aa)
Putative uncharacterized protein id=3426838 bin=GWB1_CP_36_13 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
hypothetical protein; K07089
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1649_2
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

749..1252
DNA (504bp) protein (168aa)
Tax=BJP_IG2157_Clostridiales_35_16
Ig3397_v2_scaffold_1649_3
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1249..1905
DNA (657bp) protein (219aa)
Cytochrome c biogenesis protein, transmembrane region n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J1Z2_DESRM
cytochrome c biogenesis protein, transmembrane region
Tax=BJP_IG2157_Clostridiales_35_16
Ig3397_v2_scaffold_1649_4
GWF1_Spirochaetes_49_6_curated, Spirochaetes, Bacteria

Not on your lists

2053..2532
DNA (480bp) protein (160aa)
Putative uncharacterized protein id=2957691 bin=GWF1_Spirochaetes_51_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
putative permease
Tax=GWF1_Spirochaetes_49_6_curated
Ig3397_v2_scaffold_1649_5
GWD1_Spirochaetes_27_9_curated, Spirochaetes, Bacteria

Not on your lists

2529..3095
DNA (567bp) protein (189aa)
Putative uncharacterized protein id=3426833 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
putative permease
Tax=GWD1_Spirochaetes_27_9_curated
Ig3397_v2_scaffold_1649_6
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

3294..4817
DNA (1524bp) protein (508aa)
(R)-citramalate synthase; K09011 D-citramalate synthase [EC:2.3.1.182]
(R)-citramalate synthase id=3331219 bin=GWB1_CP_36_13 species=Niabella soli genus=Niabella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1649_7
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

5118..6770
DNA (1653bp) protein (551aa)
60 kDa chaperonin id=3703702 bin=GWB1_CP_36_13 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
chaperonin GroEL; K04077 chaperonin GroEL rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1649_8
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

7122..9923
DNA (2802bp) protein (934aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. F52 RepID=J1KVP8_9FLAO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJG02323.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
Ig3397_v2_scaffold_1649_9
Leptolyngbya sp. PCC 7375, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

9920..10342
DNA (423bp) protein (141aa)
Uncharacterized protein n=3 Tax=Clostridium acetobutylicum RepID=Q97KY5_CLOAB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKU98520.1}; TaxID=102129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7375.;"
Ig3397_v2_scaffold_1649_10
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10357..11346
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2H7J8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EZP43210.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
Ig3397_v2_scaffold_1649_11
unknown

Not on your lists

11481..11912
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI00036EBEC2
Ig3397_v2_scaffold_1649_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11854..12156
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X5D9_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU47390.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Ig3397_v2_scaffold_1649_13
unknown

Not on your lists

12163..12708
DNA (546bp) protein (182aa)

This feature has no annotations

Ig3397_v2_scaffold_1649_14
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

13015..13608
DNA (594bp) protein (198aa)
Regulatory protein RecX id=3263535 bin=GWB1_CP_36_13 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
regulatory protein recX; K03565 regulatory protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1649_15
unknown

Not on your lists

13598..14842
DNA (1245bp) protein (415aa)

This feature has no annotations

Ig3397_v2_scaffold_1649_16
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

14938..15606
DNA (669bp) protein (223aa)
Peptidyl-prolyl cis-trans isomerase id=3533765 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1649_trna_1
unknown

Not on your lists

15841..15924
DNA (84bp)
transferRNA
Ig3397_v2_scaffold_1649_17
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

15949..16881
DNA (933bp) protein (311aa)
ATPase, AAA family id=2783747 bin=GWB1_CP_36_13 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
AAA ATPase central domain-containing protein; K07478 putative ATPase
Tax=GWB1_Spirochaetes_36_13_curated
Displaying 18 items

View Taxonomy