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Ig3397_v2_scaffold_1699

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_1699_1
Treponema sp. JC4, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(2..541)
DNA (540bp) protein (180aa)
Methylase n=1 Tax=Treponema sp. JC4 RepID=I0X6Y2_9SPIO
Methylase {ECO:0000313|EMBL:EID84398.1}; TaxID=1124982 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema sp. JC4.;"
cheR; methylase of chemotaxis methyl-accepting proteins CheR; K13486 chemotaxis protein methyltransferase WspC
Ig3397_v2_scaffold_1699_2
CG_Mariprof_03, Zetaproteobacteria, Proteobacteria, Bacteria

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comp(538..1545)
DNA (1008bp) protein (336aa)
chemotaxis protein CheB; K03412 two-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61]
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000374D511
Tax=CG_Mariprof_03
Ig3397_v2_scaffold_1699_3
unknown

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comp(1551..2129)
DNA (579bp) protein (193aa)

This feature has no annotations

Ig3397_v2_scaffold_1699_4
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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comp(2119..2607)
DNA (489bp) protein (163aa)
hypothetical protein TpriZ_06527 id=3910282 bin=GWB1_CP_36_13 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
CheW protein; K03408 purine-binding chemotaxis protein CheW
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1699_5
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

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comp(2611..4536)
DNA (1926bp) protein (642aa)
Methyl-accepting chemotaxis sensory transducer with Cache sensor id=3001085 bin=GWB1_Spirochaetales_60_80 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes rbh
Cache sensor-containing methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
Tax=GWB1_Spirochaetes_60_80_curated
Ig3397_v2_scaffold_1699_6
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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4878..5468
DNA (591bp) protein (197aa)
Chromate transport protein ChrA id=2911208 bin=GWF2_Lentisphaerae_57_35 species=Spirochaeta africana genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
chromate transport protein ChrA; K07240 chromate transporter
Tax=RBG_13_Planctomycetes_60_9_curated
Ig3397_v2_scaffold_1699_7
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

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5495..6025
DNA (531bp) protein (177aa)
Chromate transporter id=2911204 bin=GWF2_Lentisphaerae_57_35 species=Natranaerobius thermophilus genus=Natranaerobius taxon_order=Natranaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
chromate transport protein ChrA; K07240 chromate transporter
Tax=GWF2_Lentisphaerae_57_35_curated
Ig3397_v2_scaffold_1699_8
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(6022..7560)
DNA (1539bp) protein (513aa)
AMP-dependent synthetase and ligase id=3844895 bin=GWB1_CP_36_13 species=Mucilaginibacter paludis genus=Mucilaginibacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EHQ30282.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
amp-dependent synthetase and ligase
Ig3397_v2_scaffold_1699_9
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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comp(7557..8567)
DNA (1011bp) protein (337aa)
Putative uncharacterized protein id=3430924 bin=GWB1_CP_36_13 species=Mucilaginibacter paludis genus=Mucilaginibacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
hypothetical protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1699_10
RBG_13_Spirochaetes_51_14_curated, Spirochaetes, Bacteria

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comp(8670..9764)
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Oribacterium sp. oral taxon 078 str. F0262 RepID=D4CK59_9FIRM
putative ATPase of the PP-loop superfamily implicated in cell cycle control
Tax=RBG_13_Spirochaetes_51_14_curated
Ig3397_v2_scaffold_1699_11
unknown

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comp(9941..10069)
DNA (129bp) protein (43aa)

This feature has no annotations

Ig3397_v2_scaffold_1699_12
unknown

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comp(10393..10641)
DNA (249bp) protein (83aa)

This feature has no annotations

Ig3397_v2_scaffold_1699_13
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

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comp(10730..11860)
DNA (1131bp) protein (377aa)
Uncharacterized protein id=3116089 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
hypothetical protein
Tax=RBG_16_RIF03_38_10_curated
Ig3397_v2_scaffold_1699_14
uncultured delta proteobacterium HF0130_19C20, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12245..13069
DNA (825bp) protein (275aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|SAAS:SAAS00020852}; EC=3.2.2.- {ECO:0000256|SAAS:SAAS00275239};; EC=3.2.2.23 {ECO:0000256|SAAS:SAAS00020832};; EC=4.2.99.18 {ECO:0000256|SAAS:SAAS00054019};; TaxID=710828 species="Bacteria; Proteobacteria; Deltaproteobacteria; environmental samples.;" source="uncultured delta proteobacterium HF0130_19C20.;"
formamidopyrimidine-DNA glycosylase Fpg; K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
formamidopyrimidine-DNA glycosylase n=1 Tax=SAR324 cluster bacterium SCGC AAA240-J09 RepID=UPI0002FC14CF
Ig3397_v2_scaffold_1699_15
Tetrahymena thermophila, Tetrahymena, Hymenostomatida, Oligohymenophorea, Eukaryota

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comp(13175..14272)
DNA (1098bp) protein (366aa)
Putative uncharacterized protein n=1 Tax=Tetrahymena thermophila (strain SB210) RepID=Q23JG8_TETTS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAR96676.1}; TaxID=312017 species="Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Oligohymenophorea; Hymenostomatida; Tetrahymenina; Tetrahymenidae; Tetrahymena.;" source="Tetrahymena thermophila (strain SB210).;"
Ig3397_v2_scaffold_1699_16
Pseudogymnoascus pannorum, Pseudogymnoascus, Leotiomycetes, Ascomycota, Fungi

Not on your lists

comp(14429..14950)
DNA (522bp) protein (174aa)
Uncharacterized protein n=2 Tax=Arthrospira platensis RepID=K6EFM1_ARTPT
Uncharacterized protein {ECO:0000313|EMBL:KFY17826.1}; TaxID=1420902 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Leotiomycetes incertae sedis; Pseudeurotiaceae; Pseudogymnoascus.;" source="Pseudogymnoascus pannorum VKM F-4246.;"
hypothetical protein
Ig3397_v2_scaffold_1699_17
unknown

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comp(14969..16435)
DNA (1467bp) protein (489aa)

This feature has no annotations

Displaying 17 items

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