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Ig3397_v2_scaffold_1965

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_1965_1
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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56..982
DNA (927bp) protein (309aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit id=3533735 bin=GWB1_CP_36_13 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
appFC; oligopeptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1965_2
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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979..1515
DNA (537bp) protein (179aa)
Lipolytic protein G-D-S-L family id=3533652 bin=GWB1_CP_36_13 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
G-D-S-L family lipolytic protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1965_3
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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1901..2191
DNA (291bp) protein (97aa)
Transcriptional regulator, ArsR family id=3515486 bin=GWB1_CP_36_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
regulatory protein ArsR
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1965_4
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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2248..2523
DNA (276bp) protein (92aa)
30S ribosomal protein S20 id=3515484 bin=GWB1_CP_36_13 species=Marinitoga piezophila genus=Marinitoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1965_5
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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2573..2917
DNA (345bp) protein (115aa)
DNA-binding protein HU 1 (DNA-binding protein II) (HB) id=3515481 bin=GWB1_CP_36_13 species=Persephonella marina genus=Persephonella taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1965_6
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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2924..3304
DNA (381bp) protein (127aa)
Preprotein translocase, SecG subunit id=3515478 bin=GWB1_CP_36_13 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1965_7
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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3320..4126
DNA (807bp) protein (269aa)
prolipoprotein diacylglyceryl transferase; K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-]
Prolipoprotein diacylglyceryl transferase id=3515476 bin=GWB1_CP_36_13 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1965_8
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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4253..4987
DNA (735bp) protein (245aa)
RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
RNA methyltransferase, TrmH family, group 3 id=3562723 bin=GWB1_CP_36_13 species=Ilyobacter polytropus genus=Ilyobacter taxon_order=Fusobacteriales taxon_class=Fusobacteriia phylum=Fusobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1965_9
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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5000..6130
DNA (1131bp) protein (377aa)
Response receiver sensor protein serine/threonine phosphatase, PP2C family, PAS and PAS domain-containing id=4006198 bin=GWB1_CP_36_13 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
PAS/PAC sensor protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1965_10
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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comp(6113..8125)
DNA (2013bp) protein (671aa)
DNA ligase, NAD-dependent (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] rbh
DNA ligase, NAD-dependent id=3707194 bin=GWB1_CP_36_13 species=Sphaerochaeta pleomorpha genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1965_11
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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8595..9848
DNA (1254bp) protein (418aa)
id=4021988 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1965_12
unknown

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10385..10687
DNA (303bp) protein (101aa)

This feature has no annotations

Ig3397_v2_scaffold_1965_13
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

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comp(11053..11793)
DNA (741bp) protein (247aa)
Diguanylate cyclase n=1 Tax=Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) RepID=F0S2R7_DESTD
diguanylate cyclase
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
Ig3397_v2_scaffold_1965_14
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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comp(11803..12819)
DNA (1017bp) protein (339aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] id=3218512 bin=GWB1_CP_36_13 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Glycerol-3-phosphate dehydrogenase (NAD(P)+) rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1965_15
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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comp(12819..14177)
DNA (1359bp) protein (453aa)
GTPase Der id=3218513 bin=GWB1_CP_36_13 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
engA; GTP-binding protein EngA; K03977 GTP-binding protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1965_16
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

14448..15602
DNA (1155bp) protein (385aa)
Uncharacterized protein TP_0466 id=3630284 bin=GWB1_CP_36_13 species=unknown genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
hypothetical protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1965_17
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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15975..17330
DNA (1356bp) protein (452aa)
lysine 2,3-aminomutase YodO family protein (EC:5.4.3.2); K01843 lysine 2,3-aminomutase [EC:5.4.3.2] rbh
Lysine 2,3-aminomutase YodO family protein {ECO:0000313|EMBL:AEH60898.1}; EC=5.4.3.2 {ECO:0000313|EMBL:AEH60898.1};; TaxID=679901 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosalsum.;" source="Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5); (Methanohalophilus zhilinae).;"
Lysine 2,3-aminomutase YodO family protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XLX0_METZD rbh
Ig3397_v2_scaffold_1965_18
Desulfuromonas acetoxidans, Desulfuromonas, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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17330..18199
DNA (870bp) protein (290aa)
GCN5-related N-acetyltransferase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXY3_DESAC
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EAT15010.1}; TaxID=281689 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Desulfuromonadaceae; Desulfuromonas.;" source="Desulfuromonas acetoxidans DSM 684.;"
GNAT family acetyltransferase
Ig3397_v2_scaffold_1965_19
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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comp(18223..23100)
DNA (4878bp) protein (1626aa)
multi-sensor hybrid multi-kinase id=3793576 bin=GWB1_CP_36_13 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
serine/threonine protein kinase
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1965_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(23403..23987)
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=unclassified Aminicenantes RepID=UPI00035E7962
Uncharacterized protein {ECO:0000313|EMBL:KCZ70480.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
Ig3397_v2_scaffold_1965_21
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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24106..24777
DNA (672bp) protein (224aa)
lytic transglycosylase; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-]
Lytic transglycosylase catalytic id=4006046 bin=GWB1_CP_36_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Displaying 21 items

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