ggKbase home page

Ig3397_v2_scaffold_5493

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_5493_1
unknown

Not on your lists

1..195
DNA (195bp) protein (65aa)

This feature has no annotations

Ig3397_v2_scaffold_5493_2
R_Planctomycetes_38_41, Planctomycetes, Bacteria

Not on your lists

170..751
DNA (582bp) protein (194aa)
UPF0278 protein KSU1_B0644 id=2322656 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
hypothetical protein; K09006 hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Planctomycetes_38_41_curated
Ig3397_v2_scaffold_5493_3
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(735..1718)
DNA (984bp) protein (328aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
tRNA-dihydrouridine synthase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QBB8_9CLOT
NifR3 family TIM-barrel protein
Ig3397_v2_scaffold_5493_4
GWF1_Spirochaetes_49_6_curated, Spirochaetes, Bacteria

Not on your lists

1937..2869
DNA (933bp) protein (311aa)
Uncharacterized protein n=5 Tax=Treponema denticola RepID=M2BAA9_TREDN
M23/M37 peptidase
Tax=GWF1_Spirochaetes_49_6_curated
Ig3397_v2_scaffold_5493_5
GWF1_Spirochaetes_49_6_curated, Spirochaetes, Bacteria

Not on your lists

3167..3994
DNA (828bp) protein (276aa)
Peptidase, M23 family id=2455817 bin=GWF1_Spirochaetes_51_8 species=Treponema phagedenis genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
pep; peptidase
Tax=GWF1_Spirochaetes_49_6_curated
Ig3397_v2_scaffold_5493_6
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

4001..4699
DNA (699bp) protein (233aa)
TPR repeat-containing protein n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LS00_9SPIR
TPR repeat-containing protein {ECO:0000313|EMBL:CCY75871.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
TPR domain-containing protein
Ig3397_v2_scaffold_5493_7
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

4699..5862
DNA (1164bp) protein (388aa)
two-component member protein id=3618255 bin=GWB1_CP_36_13 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
histidine kinase
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_5493_8
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

5877..6398
DNA (522bp) protein (174aa)
signal peptide peptidase SppA, 36K type; K04773 protease IV [EC:3.4.21.-]
Proteinase IV id=3618253 bin=GWB1_CP_36_13 species=Hydrogenivirga sp. 128-5-R1-1 genus=Hydrogenivirga taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Displaying 8 items

View Taxonomy