ggKbase home page

Ig3397_v2_scaffold_3613

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_3613_1
RIFOXYC12_FULL_Lentisphaerae_60_16_curated, Lentisphaerae, Bacteria

Not on your lists

2..169
DNA (168bp) protein (56aa)
Iron-only hydrogenase maturation protein HydF n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AP40_PELPD
small GTP-binding protein
Tax=RIFOXYC12_FULL_Lentisphaerae_60_16_curated
Ig3397_v2_scaffold_3613_2
Smithella sp. SCADC, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

166..1200
DNA (1035bp) protein (345aa)
radical SAM protein; K01012 biotin synthetase [EC:2.8.1.6] rbh
Radical SAM domain protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WHL0_GEOS8 rbh
Biotin synthase {ECO:0000313|EMBL:KFO67744.1}; TaxID=1499107 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. SCADC.;"
Ig3397_v2_scaffold_3613_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1304..1549
DNA (246bp) protein (82aa)
hypothetical protein id=2035035 bin=GWB2_Ignavibacteria_35_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
Ig3397_v2_scaffold_3613_4
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1530..1736
DNA (207bp) protein (69aa)
Uncharacterized protein {ECO:0000313|EMBL:KHD04328.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
YcfA family protein id=2035033 bin=GWB2_Ignavibacteria_35_12 species=Anabaena sp. 90 genus=Anabaena taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
hypothetical protein; K07339 hypothetical protein
Ig3397_v2_scaffold_3613_5
unknown

Not on your lists

1749..1883
DNA (135bp) protein (45aa)

This feature has no annotations

Ig3397_v2_scaffold_3613_6
Smithella sp. ME-1, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2328..2555
DNA (228bp) protein (76aa)
2-oxoisovalerate dehydrogenase, E1 component beta subunit id=3802636 bin=GWB1_CP_36_13 species=Petrotoga mobilis genus=Petrotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Uncharacterized protein {ECO:0000313|EMBL:ESP62436.1}; TaxID=1380771 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. ME-1.;"
2-oxoisovalerate dehydrogenase, E1 component subunit beta
Ig3397_v2_scaffold_3613_7
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

2548..2793
DNA (246bp) protein (82aa)
YcfA family protein id=3802635 bin=GWB1_CP_36_13 species=Pseudanabaena biceps genus=Pseudanabaena taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
hypothetical protein; K07339 hypothetical protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3613_8
unknown

Not on your lists

3135..3320
DNA (186bp) protein (62aa)

This feature has no annotations

Ig3397_v2_scaffold_3613_9

Not on your lists

3298..3957
DNA (660bp) protein (220aa)
Response regulator with a HTH DNA-binding domain id=3905770 bin=GWF2_Melioribacter_38_21 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
Uncharacterized protein {ECO:0000313|EMBL:KKN44881.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Response regulator
Ig3397_v2_scaffold_3613_10
Burkholderia sp. MR1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4005..4352
DNA (348bp) protein (116aa)
response regulator receiver sensor signal transduction histidine kinase (EC:2.7.3.-)
histidine kinase n=1 Tax=Xanthobacteraceae RepID=UPI000366ADE0
Histidine kinase {ECO:0000313|EMBL:KIG01738.1}; TaxID=870478 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MR1.;"
Ig3397_v2_scaffold_3613_11
unknown

Not on your lists

comp(4606..5070)
DNA (465bp) protein (155aa)

This feature has no annotations

Ig3397_v2_scaffold_3613_12
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

5569..6774
DNA (1206bp) protein (402aa)
Type I phosphodiesterase/nucleotide pyrophosphatase id=2797071 bin=GWB1_CP_36_13 species=unknown genus=Turicibacter taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
type I phosphodiesterase/nucleotide pyrophosphatase
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_3613_13
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6803..8764
DNA (1962bp) protein (654aa)
Cyclic nucleotide-binding domain protein id=3853726 bin=GWF2_Bacteroidetes_38_335 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
PAS sensor protein
Tax=GWF2_Bacteroidetes_38_335_curated
Displaying 13 items

View Taxonomy