ggKbase home page

Ig3397_v2_scaffold_990_6

Organism: BJP_Ig3397_Hor_194_2013_Spirochaetes_44_7

near complete RP 50 / 55 MC: 4 BSCG 49 / 51 MC: 3 ASCG 10 / 38 MC: 1
Location: 3151..3888

Top 3 Functional Annotations

Value Algorithm Source
rluD; pseudouridine synthase (EC:5.4.99.12); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] similarity KEGG
DB: KEGG
  • Identity: 42.4
  • Coverage: 245.0
  • Bit_score: 174
  • Evalue 3.80e-41
Ribosomal large subunit pseudouridine synthase D id=4026308 bin=GWB1_CP_36_13 species=Treponema vincentii genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 similarity UNIREF
DB: UNIREF100
  • Identity: 50.2
  • Coverage: 237.0
  • Bit_score: 242
  • Evalue 4.70e-61
Tax=GWB1_Spirochaetes_36_13_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 50.2
  • Coverage: 237.0
  • Bit_score: 242
  • Evalue 6.60e-61

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

GWB1_Spirochaetes_36_13_curated → Spirochaetes → Bacteria

Sequences

DNA sequence
Length: 738
ATGCAAAAACGCCCCGTCATCGATATTATTTATGAAAACAGCGACATCATTGCGGTCAATAAACCCGCAGGCCTGGTAGTCATTCCCGACCGCTTCGGTTTTGAGCCCTATATACTGAAAGAAGTCCTGGAGGCGCAAACGGGAAAGCCCCTTCTGCTCGTGCACCGTCTGGACAAAACTACCTCGGGTGTCATGCTGTTTGCCAAAAACACCGAGGCCCAAAGAGAGCTCTCCCGCCTCTGGGAAGATAATCTGGTGCATAAGGAATACCGGGTTTTAGTGGACGGTTATTTCTCCTACGATACATTCAGAGCCGATTACCCTCTCTCGGAAGGCCGCCGGGGCAAGATGCAAGTAGAAGAAAGCGGCAAGCCATCCTCTACGGAATTTACAACCCTGGAACGGTTTAGGGATTACACCCTGCTTAAAGCGGTCTTAAAAACGGGCCGCACCCATCAAATCCGTATTCACCTTTCTTATCTGGGCACTCCCGTGCTTGCCGATCACCTTTACGGCTTTGACCGTCCGTTGTTGCTCTCCTCTCTCAAGGGCCGCAAGTACCGCCCTTCCCATTCCAAGGAAGAAAAACCCCTCATTGAAAGAGTCGCACTGCATTCCTTTTATACGTCATTGGTTTGGGACAATGTCCCTCTAGAGTTTACGGCCCCTTTACCCAAGGATTTCAATGCGGTCTTGACCCAGCTTAGAAAACACAACAAACTAATCAGCTTATTATAA
PROTEIN sequence
Length: 246
MQKRPVIDIIYENSDIIAVNKPAGLVVIPDRFGFEPYILKEVLEAQTGKPLLLVHRLDKTTSGVMLFAKNTEAQRELSRLWEDNLVHKEYRVLVDGYFSYDTFRADYPLSEGRRGKMQVEESGKPSSTEFTTLERFRDYTLLKAVLKTGRTHQIRIHLSYLGTPVLADHLYGFDRPLLLSSLKGRKYRPSHSKEEKPLIERVALHSFYTSLVWDNVPLEFTAPLPKDFNAVLTQLRKHNKLISLL*