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Ig3397_v2_scaffold_990

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_990_1
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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comp(2..403)
DNA (402bp) protein (134aa)
Tyrosine recombinase XerC id=3427297 bin=GWB1_CP_36_13 species=Turneriella parva genus=Turneriella taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_990_2
Erysipelotrichaceae bacterium 5_2_54FAA, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(400..747)
DNA (348bp) protein (116aa)
Ribosome-binding factor A n=2 Tax=Firmicutes RepID=H1BKK3_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=552396 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 5_2_54FAA.;"
ribosome-binding factor A
Ig3397_v2_scaffold_990_3
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(957..1196)
DNA (240bp) protein (80aa)
UPF0109 protein PERMA_1431 id=3960348 bin=GWB1_CP_36_13 species=Persephonella marina genus=Persephonella taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
hypothetical protein; K06960
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_990_4
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(1242..1496)
DNA (255bp) protein (85aa)
30S ribosomal protein S16 id=3960349 bin=GWB1_CP_36_13 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_990_5
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(1517..2848)
DNA (1332bp) protein (444aa)
Signal recognition particle protein id=3960350 bin=GWB1_CP_36_13 species=Flexistipes sinusarabici genus=Flexistipes taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
signal recognition particle protein; K03106 signal recognition particle subunit SRP54
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_990_6
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

3151..3888
DNA (738bp) protein (246aa)
rluD; pseudouridine synthase (EC:5.4.99.12); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Ribosomal large subunit pseudouridine synthase D id=4026308 bin=GWB1_CP_36_13 species=Treponema vincentii genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_990_7
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

3904..4476
DNA (573bp) protein (191aa)
tmk; dTMP kinase (EC:2.7.4.9); K00943 dTMP kinase [EC:2.7.4.9]
Probable thymidylate kinase id=4026305 bin=GWB1_CP_36_13 species=Candidatus Korarchaeum cryptofilum genus=Candidatus Korarchaeum taxon_order=unknown taxon_class=unknown phylum=Korarchaeota tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_990_8
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

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4480..5670
DNA (1191bp) protein (397aa)
WSSV054 id=4026303 bin=GWB1_CP_36_13 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
hypothetical protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_990_9
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


5657..7396
DNA (1740bp) protein (580aa)
prolyl-tRNA synthetase; K01881 prolyl-tRNA synthetase [EC:6.1.1.15]
Proline--tRNA ligase id=4026300 bin=GWB1_CP_36_13 species=Treponema denticola genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_990_10

Not on your lists

comp(7438..8994)
DNA (1557bp) protein (519aa)
Response regulator receiver modulated metal dependent phosphohydrolase id=1934892 bin=GWE2_Spirochaete_31_10 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWE2_Spirochaete_31_10 organism_group=Spirochaetes organism_desc=Good + rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD29020.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
response regulator receiver modulated metal dependent phosphohydrolase
Ig3397_v2_scaffold_990_11
Pelosinus sp. UFO1, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(9013..10989)
DNA (1977bp) protein (659aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=484770 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus sp. UFO1.;"
hypothetical protein n=1 Tax=Anaeromusa acidaminophila RepID=UPI00035E3647 rbh
PAS/PAC sensor signal transduction histidine kinase rbh
Ig3397_v2_scaffold_990_12
GWF1_Spirochaetes_51_8_curated, Spirochaetes, Bacteria

Not on your lists

comp(11432..13441)
DNA (2010bp) protein (670aa)
id=2429343 bin=GWF1_Spirochaetes_51_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
Tax=GWF1_Spirochaetes_51_8_curated
Ig3397_v2_scaffold_990_13
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13862..15142
DNA (1281bp) protein (427aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=686831 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI000376549B
Ig3397_v2_scaffold_990_14
unknown

Not on your lists

15215..16381
DNA (1167bp) protein (389aa)

This feature has no annotations

Ig3397_v2_scaffold_990_15
Smithella sp. D17, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16526..17179
DNA (654bp) protein (218aa)
Lysine transporter LysE {ECO:0000313|EMBL:KFZ44430.1}; TaxID=1538639 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. D17.;"
lysine exporter protein LysE/YggA
Lysine efflux protein id=4019676 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
Ig3397_v2_scaffold_990_16
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

17198..18007
DNA (810bp) protein (270aa)
Putative N-carbamoyl-D-amino acid hydrolase id=3336515 bin=GWB1_CP_36_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
hypothetical protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_990_17
unknown

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comp(18023..18190)
DNA (168bp) protein (56aa)

This feature has no annotations

Ig3397_v2_scaffold_990_18
unknown

Not on your lists

comp(18323..18490)
DNA (168bp) protein (56aa)

This feature has no annotations

Ig3397_v2_scaffold_990_19
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18655..19134
DNA (480bp) protein (160aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO30219.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
Ig3397_v2_scaffold_990_20
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

19385..21310
DNA (1926bp) protein (642aa)
arginine decarboxylase; K01585 arginine decarboxylase [EC:4.1.1.19]
Arginine decarboxylase id=3476679 bin=GWF2_Lentisphaerae_49_21 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good + rbh
Tax=GWF2_Lentisphaerae_49_21_curated
Ig3397_v2_scaffold_990_21
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

21338..22528
DNA (1191bp) protein (397aa)
catalase; K00290 saccharopine dehydrogenase (NAD+, L-lysine forming) [EC:1.5.1.7]
Carboxynorspermidine dehydrogenase n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RXL5_LEAB4
Carboxynorspermidine dehydrogenase {ECO:0000313|EMBL:ADQ17250.1}; Flags: Precursor;; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
Ig3397_v2_scaffold_990_22
BJP_IG2069_Spirochaetales_48_31, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

22507..23667
DNA (1161bp) protein (387aa)
carboxynorspermidine decarboxylase; K13747 carboxynorspermidine decarboxylase [EC:4.1.1.-]
carboxynorspermidine decarboxylase n=1 Tax=Desulfovibrio desulfuricans RepID=UPI00035DCCAE
Tax=BJP_IG2069_Spirochaetales_48_31
Ig3397_v2_scaffold_990_23
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24018..25229
DNA (1212bp) protein (404aa)
Putative uncharacterized protein id=5030094 bin=GWA2_Bacteroidetes_33_15 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Bacteroidetes_33_15 organism_group=Bacteroidetes
Delta-60 repeat-containing protein
Tax=GWD2_Bacteroidetes_33_33_curated
Ig3397_v2_scaffold_990_24
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25271..26029)
DNA (759bp) protein (253aa)
Electron transport complex, RnfABCDGE type, D subunit id=1266716 bin=GWE1_Spirochaetes_32_154 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE1_Spirochaetes_32_154 organism_group=Spirochaetes
Na+-transporting NADH-quinone reductase subunit 2; K03614 electron transport complex protein RnfD
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium thermophilum (strain T / IAM 14863).;"
Displaying 24 items

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