ggKbase home page

bjp_ig2599_scaffold_1402

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig2599_scaffold_1402_1
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

96..344
DNA (249bp) protein (83aa)
Putative uncharacterized protein id=4536930 bin=GWF2_Ignavibacteria_35_20 species=Capnocytophaga sp. oral taxon 326 genus=Capnocytophaga taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hypothetical protein Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
hypothetical protein
bjp_ig2599_scaffold_1402_2
Thermodesulfovibrio yellowstonii, Thermodesulfovibrio, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

341..1261
DNA (921bp) protein (307aa)
modification methylase BamHI (EC:2.1.1.113)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=289376 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio.;" sourc
hypothetical protein n=1 Tax=unclassified candidate division EM 19 RepID=UPI000365B13E
bjp_ig2599_scaffold_1402_3
CG_Falkow_02, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

1286..1504
DNA (219bp) protein (73aa)
id=3423179 Tax=CG_Falkow_02
id=3423179 bin=GWA1_ZB2_49_26 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
bjp_ig2599_scaffold_1402_4
RBG_13_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

Not on your lists

1521..2417
DNA (897bp) protein (299aa)
hypothetical protein Tax=RBG_13_Chloroflexi_50_10_curated
hypothetical protein id=14631658 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin9_gal15 organism_group=GAL15
hypothetical protein
bjp_ig2599_scaffold_1402_5
R_RIF_OD1_08_38_39, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

2438..2671
DNA (234bp) protein (78aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_08_38_39_curated
bjp_ig2599_scaffold_1402_6
RBG_13_RIF_OD1_07_37_56_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

2778..3245
DNA (468bp) protein (156aa)
hypothetical protein Tax=RBG_13_RIF_OD1_07_37_56_curated
hypothetical protein
bjp_ig2599_scaffold_1402_7
CG_Falkow_02, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

3250..3861
DNA (612bp) protein (204aa)
Putative uncharacterized protein Tax=CG_Falkow_02
Putative uncharacterized protein id=4162806 bin=GWF2_Melainabacteria_37_15 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Melainabacteria_37_15 organism_group=Melainabacteria
bjp_ig2599_scaffold_1402_8
CG_Gottesman_01, Gottesmanbakteria, Microgenomates, Bacteria

Not on your lists

comp(3966..4790)
DNA (825bp) protein (275aa)
indole-3-glycerol-phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48] Tax=CG_Gottesman_01
Indole-3-glycerol phosphate synthase n=1 Tax=Caldanaerobacter subterraneus subsp. yonseiensis KB-1 RepID=U5CSE3_THEYO
trpC; indole-3-glycerol phosphate synthase
bjp_ig2599_scaffold_1402_9
R_OP11_Gottesmanbacteria_40_13, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(4787..5833)
DNA (1047bp) protein (349aa)
anthranilate phosphoribosyltransferase; K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18] Tax=RIFCSPHIGHO2_02_FULL_OP11_Gottesmanbacteria_40_13_curated
Anthranilate phosphoribosyltransferase id=4305223 bin=GWA2_OP3_52_12 species=unknown genus=Methanotorris taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors rbh
anthranilate phosphoribosyltransferase
bjp_ig2599_scaffold_1402_10
CG_Magasa_01, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(6047..6637)
DNA (591bp) protein (197aa)
Tax=CG_Magasa_01
bjp_ig2599_scaffold_1402_11
GWC1_OD1_37_10, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

6778..8322
DNA (1545bp) protein (515aa)
Type II adenine specific DNA methyltransferase {ECO:0000313|EMBL:KKQ21426.1}; TaxID=1619010 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWC1_37_10.;"
Type II adenine specific DNA methyltransferase id=2193634 bin=GWB2_Elusimicrobium_63_22 species=unknown genus=Helicobacter taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
D12 class N6 adenine-specific DNA methyltransferase family protein
bjp_ig2599_scaffold_1402_12
R_OD1_Giovannonibacteria_46_32, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(8325..8864)
DNA (540bp) protein (180aa)
Type II restriction endonuclease (Fragment) n=1 Tax=mine drainage metagenome RepID=T1ARF8_9ZZZZ
Type II restriction endonuclease Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_46_32_curated
type II restriction/modification enzyme
bjp_ig2599_scaffold_1402_13
R_OP11_Gottesmanbacteria_39_12b, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(8929..9513)
DNA (585bp) protein (195aa)
anthranilate/para-aminobenzoate synthases component II (EC:4.1.3.27); K01658 anthranilate synthase component II [EC:4.1.3.27] Tax=RIFCSPLOWO2_01_FULL_OP11_Gottesmanbacteria_39_12b_curated
PabA; anthranilate/para-aminobenzoate synthase component II; K01658 anthranilate synthase component II [EC:4.1.3.27] id=5084603 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
trpG; Anthranilate synthase component 2 (EC:4.1.3.27)
bjp_ig2599_scaffold_1402_14
R_OP11_Gottesmanbacteria_39_12b, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(9510..10946)
DNA (1437bp) protein (479aa)
anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] Tax=RIFCSPLOWO2_01_FULL_OP11_Gottesmanbacteria_39_12b_curated
anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] id=5084602 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2 rbh
anthranilate synthase component I (EC:4.1.3.27)
bjp_ig2599_scaffold_1402_15
R_OP11_Roizmanbacteria_36_11, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

comp(11133..12128)
DNA (996bp) protein (332aa)
tryptophan synthase subunit slpha; K01695 tryptophan synthase alpha chain [EC:4.2.1.20] Tax=RIFCSPLOWO2_02_FULL_OP11_Roizmanbacteria_36_11_curated
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20); K01695 tryptophan synthase alpha chain [EC:4.2.1.20] id=42813 bin=ACD37 species=ACD37 genus=ACD37 taxon_order=ACD37 taxon_class=ACD37 phylum=OP11 tax=ACD37 organism_group=OP11 (Microgenomates) organism_desc=OP11
tryptophan synthase subunit slpha
bjp_ig2599_scaffold_1402_16
R_OP11_Gottesmanbacteria_39_10, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(12092..13345)
DNA (1254bp) protein (418aa)
tryptophan synthase subunit beta (EC:4.2.1.20); K01696 tryptophan synthase beta chain [EC:4.2.1.20] Tax=RIFCSPHIGHO2_01_FULL_OP11_Gottesmanbacteria_39_10_curated
tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain n=1 Tax=Frankia sp. CN3 RepID=G6H8F2_9ACTO rbh
bjp_ig2599_scaffold_1402_17
CG_CPR10_02, CG_CPR10, Bacteria

Not on your lists

comp(13869..15557)
DNA (1689bp) protein (563aa)
metallo-beta-lactamase; K12574 ribonuclease J [EC:3.1.-.-] Tax=CG_CPR10_02
rnjA; ribonuclease J 1 (EC:3.1.-.-)
RNA-metabolising metallo-beta-lactamase id=2670109 bin=GWA1_ZB2_49_26 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
bjp_ig2599_scaffold_1402_18
Methanocella paludicola, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15614..15859)
DNA (246bp) protein (82aa)
Putative NADH dehydrogenase n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YZB1_METPS
putative NADH dehydrogenase
Putative NADH dehydrogenase {ECO:0000313|EMBL:BAI61783.1}; TaxID=304371 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella paludi
bjp_ig2599_scaffold_1402_19
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(15892..16119)
DNA (228bp) protein (76aa)
Nitroreductase {ECO:0000313|EMBL:ADP77082.1}; TaxID=523846 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanothermaceae; Methanothermus.;" source="Methanothermus fervidus (s
bjp_ig2599_scaffold_1402_trna_1
unknown

Not on your lists

comp(16183..16266)
DNA (84bp)
transferRNA
bjp_ig2599_scaffold_1402_20
RBG_13_OD1_Wolfebacteria_41_7_curated, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(16561..17046)
DNA (486bp) protein (162aa)
Intein-containing protein Tax=RBG_13_OD1_Wolfebacteria_41_7_curated
Intein-containing protein id=3506530 bin=GWC1_OD1_38_17 species=Bacillus cereus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
hypothetical protein
bjp_ig2599_scaffold_1402_21
R_OD1_Kaiserbacteria_55_17, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(17148..18092)
DNA (945bp) protein (315aa)
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49); K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] Tax=RIFCSPHIGHO2_01_FULL_OD1_Kaiserbacteria_55_17_curated
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2EMD4_9BACT rbh
6-phosphogluconate dehydrogenase
bjp_ig2599_scaffold_1402_22
unknown

Not on your lists

18607..18948
DNA (342bp) protein (114aa)

This feature has no annotations

bjp_ig2599_scaffold_1402_23
unknown

Not on your lists

comp(19333..19536)
DNA (204bp) protein (68aa)

This feature has no annotations

bjp_ig2599_scaffold_1402_24
GWA2_OD1_39_24, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(19538..19636)
DNA (99bp) protein (33aa)
DNA-binding helix-turn-helix protein Tax=GWA2_OD1_39_24
Displaying 25 items

View Taxonomy