ggKbase home page

Ig5772_scaffold_3

Search features with annotation key words

Displaying items 1-30 of 639 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig5772_scaffold_3_1
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1064)
DNA (1062bp) protein (354aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208};
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Oceanibaculum indicum P24 RepID=K2K010_9PROT
Ig5772_scaffold_3_2
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1070..2776)
DNA (1707bp) protein (569aa)
Peptidoglycan synthetase FtsI n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IRG8_RHOCS rbh
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:EWY37520.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
ftsI; peptidoglycan synthetase FtsI rbh
Ig5772_scaffold_3_3
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2776..3105)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036616E0
secreted (periplasmic) protein-like protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
Ig5772_scaffold_3_4
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3102..4049)
DNA (948bp) protein (316aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Oceanibaculum indicum P24 RepID=K2JNF3_9PROT rbh
mraW; S-adenosyl-methyltransferase MraW rbh
Ig5772_scaffold_3_5
RIFOXYD12_FULL_Rhodospirillales_60_8_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4046..4486)
DNA (441bp) protein (147aa)
Protein MraZ n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TVH1_9PROT
hypothetical protein
Tax=RIFOXYD12_FULL_Rhodospirillales_60_8_curated
Ig5772_scaffold_3_6
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5220..6212)
DNA (993bp) protein (331aa)
Vanillate O-demethylase oxygenase subunit (EC:1.14.13.82)
Cupriavidus basilensis strain 4G11 chromosome main, complete sequence {ECO:0000313|EMBL:AJG18221.1}; EC=1.14.13.82 {ECO:0000313|EMBL:AJG18221.1};; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
Rieske (2Fe-2S) domain-containing protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SA05_9BURK
Ig5772_scaffold_3_7
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6248..6979)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037748C7
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EWY37516.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
N-acetylmuramoyl-L-alanine amidase
Ig5772_scaffold_3_8
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6976..7860)
DNA (885bp) protein (295aa)
Drug/metabolite transporter superfamily permease n=1 Tax=Oceanibaculum indicum P24 RepID=K2KF65_9PROT
Multidrug DMT transporter permease {ECO:0000313|EMBL:KGM31422.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
drug/metabolite transporter superfamily permease
Ig5772_scaffold_3_9
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7857..8591)
DNA (735bp) protein (245aa)
DnaJ-like protein DjlA n=1 Tax=Oceanibaculum indicum P24 RepID=K2JNG1_9PROT
DnaJ-like protein DjlA {ECO:0000313|EMBL:EKE76017.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
djlA; DnaJ-like chaperone protein
Ig5772_scaffold_3_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8794..10815
DNA (2022bp) protein (674aa)
glutathione import ATP-binding protein GsiA (EC:3.6.3.-) rbh
Glutathione import ATP-binding protein GsiA n=2 Tax=Oligotropha carboxidovorans RepID=B6JJN1_OLICO rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Ig5772_scaffold_3_11
bacterium YEK0313, Bacteria

Not on your lists

10876..12498
DNA (1623bp) protein (541aa)
ABC transporter substrate-binding protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BKG6_OLICM rbh
Putative D,D-dipeptide-binding periplasmic protein DdpA {ECO:0000313|EMBL:CEJ10000.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter substrate-binding protein rbh
Ig5772_scaffold_3_12
bacterium YEK0313, Bacteria

Not on your lists

12509..13468
DNA (960bp) protein (320aa)
Dipeptide transport system permease protein DppB n=2 Tax=Oligotropha carboxidovorans RepID=B6JJN3_OLICO rbh
Glutathione transport system permease protein GsiC {ECO:0000313|EMBL:CEJ09999.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
gsiC; glutathione transport system permease GsiC rbh
Ig5772_scaffold_3_13
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13470..14369
DNA (900bp) protein (300aa)
Glutathione transport system permease GsiD n=2 Tax=Oligotropha carboxidovorans RepID=B6JJN4_OLICO rbh
glutathione transport system permease GsiD rbh
Tax=RBG_16_Gamma2_60_9_curated
Ig5772_scaffold_3_14
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14576..15106
DNA (531bp) protein (177aa)
GCN5-related N-acetyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVA7_PARL1
Uncharacterized protein {ECO:0000313|EMBL:KGM31631.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
N-acetyltransferase GCN5
Ig5772_scaffold_3_15
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15153..15677
DNA (525bp) protein (175aa)
MarR-family transcriptional Regulator n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2L5H2_9PROT
marR-family transcriptional Regulator
MarR-family transcriptional Regulator {ECO:0000313|EMBL:AJD53238.1}; TaxID=1123366 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira xiamenensis M-5 = DSM 17429.;"
Ig5772_scaffold_3_16
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15729..19337
DNA (3609bp) protein (1203aa)
5-oxoprolinase n=1 Tax=Oceanibaculum indicum P24 RepID=K2KF70_9PROT rbh
5-oxoprolinase {ECO:0000313|EMBL:EKE76020.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
5-oxoprolinase
Ig5772_scaffold_3_17
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19426..19977
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AIL2_NITEC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI58814.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
Ig5772_scaffold_3_18
Mesorhizobium sp. LSHC426A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20004..20921
DNA (918bp) protein (306aa)
UPI0003CF1CAD related cluster n=1 Tax=unknown RepID=UPI0003CF1CAD
Uncharacterized protein {ECO:0000313|EMBL:ESX41129.1}; TaxID=1287298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC426A00.;"
Ig5772_scaffold_3_19
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20945..22324)
DNA (1380bp) protein (460aa)
putative acyl-CoA transferase/carnitine dehydratase (EC:5.1.99.4) rbh
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Burkholderia multivorans (strain ATCC 17616 / 249) RepID=A9AGL5_BURM1 rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Ig5772_scaffold_3_20
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22377..23345
DNA (969bp) protein (323aa)
Putative permease of the drug/metabolite transporter superfamily n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AZ39_AZOBR
putative permease of the drug/metabolite transporter superfamily
Putative permease of the drug/metabolite transporter superfamily {ECO:0000313|EMBL:CCD03198.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Ig5772_scaffold_3_21
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23375..24781
DNA (1407bp) protein (469aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI000360DE8F
2-hydroxy-acid oxidase {ECO:0000313|EMBL:EWY38205.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
putative D-lactate dehydrogenase
Ig5772_scaffold_3_22
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24778..25599)
DNA (822bp) protein (274aa)
Short chain dehydrogenase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQF3_9PROT
phytanoyl-CoA dioxygenase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Ig5772_scaffold_3_23
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25895..27019
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036B76D3 rbh
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:KFG70071.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
extracellular solute-binding protein
Ig5772_scaffold_3_24
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27095..27676
DNA (582bp) protein (194aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A155_STAND
tripartite ATP-independent periplasmic transporter DctQ component
Tripartite ATP-independent periplasmic transporter DctQ component {ECO:0000313|EMBL:ADH89413.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Ig5772_scaffold_3_25
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27708..29147
DNA (1440bp) protein (480aa)
C4-dicarboxylate ABC transporter n=1 Tax=Xanthobacteraceae RepID=UPI000367AC4F
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:KJB92530.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
TRAP dicarboxylate transporter subunit DctM rbh
Ig5772_scaffold_3_26
Burkholderia sp. USM B20, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29116..29946
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI00031C2EF3
Hydratase {ECO:0000313|EMBL:KJE54525.1}; TaxID=1571773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. USM B20.;"
putative hydratase/decarboxylase
Ig5772_scaffold_3_27
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29950..30606)
DNA (657bp) protein (219aa)
Integral membrane protein TerC n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11KI7_MESSB
integral membrane protein TerC
Integral membrane protein TerC {ECO:0000313|EMBL:ABG62088.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Ig5772_scaffold_3_28
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30724..31374)
DNA (651bp) protein (217aa)
Putative transmembrane protein n=1 Tax=Ensifer adhaerens RepID=I0FX92_ENSAD
Membrane protein {ECO:0000313|EMBL:KDP74602.1}; Putative transmembrane protein {ECO:0000313|EMBL:BAL73129.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
integral membrane protein TerC
Ig5772_scaffold_3_29
Chroococcales cyanobacterium CENA595, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

31500..31892
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI0003828C8F
Uncharacterized protein {ECO:0000313|EMBL:KJH71661.1}; TaxID=1618023 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales.;" source="Chroococcales cyanobacterium CENA595.;"
hypothetical protein
Ig5772_scaffold_3_30
alpha proteobacterium Q-1, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31903..33996
DNA (2094bp) protein (698aa)
Outer membrane assembly protein n=1 Tax=Rickettsia canadensis str. CA410 PF94_RICCA">RepID=H6PF94_RICCA
Putative assembly protein {ECO:0000313|EMBL:GAK33741.1}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
outer membrane assembly protein
Displaying items 1-30 of 639 in total

View Taxonomy