ggKbase home page

13_1_20cm_full_scaffold_2258

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_full_scaffold_2258_1
unknown

Not on your lists

2..82
DNA (81bp) protein (27aa)

This feature has no annotations

13_1_20cm_full_scaffold_2258_2
Corynebacterium variabile, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

128..550
DNA (423bp) protein (141aa)
HTH3 DNA-binding transcription regulator n=1 Tax=Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131) RepID=G0HEJ1_CORVD
clgR; HTH3 DNA-binding transcription regulator
HTH3 DNA-binding transcription regulator {ECO:0000313|EMBL:AEK36977.1}; TaxID=858619 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacteriu
13_1_20cm_full_scaffold_2258_3
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

556..1116
DNA (561bp) protein (187aa)
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92) Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RYS7_THEOJ
13_1_20cm_full_scaffold_2258_4
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

1113..2075
DNA (963bp) protein (321aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7A0_SPHTD
NAD-dependent epimerase/dehydratase Tax=RBG_16_Chloroflexi_68_14_curated
NAD-dependent epimerase/dehydratase
13_1_20cm_full_scaffold_2258_5
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

Not on your lists

2087..4933
DNA (2847bp) protein (949aa)
UPF0182 protein Mpet_0004 n=1 Tax=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) RepID=E1RCV4_METP4
hypothetical protein; K09118 hypothetical protein Tax=RBG_16_Chloroflexi_51_9_curated
hypothetical protein
13_1_20cm_full_scaffold_2258_6
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4930..5556)
DNA (627bp) protein (209aa)
pcm-3; protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:M
protein-L-isoaspartate O-methyltransferase n=1 Tax=Methylococcus capsulatus RepID=UPI0002D88597
13_1_20cm_full_scaffold_2258_7
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

5698..6585
DNA (888bp) protein (296aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:CCF85147.1}; EC=2.4.2.8 {ECO:0000313|EMBL:CCF85147.1};; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sph
Hypoxanthine phosphoribosyltransferase n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EKD5_9CHLR
putative hypoxanthine phosphoribosyl transferase with additional GAF motif
13_1_20cm_full_scaffold_2258_8
unknown

Not on your lists

6627..6899
DNA (273bp) protein (91aa)

This feature has no annotations

13_1_20cm_full_scaffold_2258_9
unknown

Not on your lists

6931..7077
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_20cm_full_scaffold_2258_10
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

7183..8346
DNA (1164bp) protein (388aa)
beta-ketothiolase (EC:2.3.1.16)
Acetyl-CoA acetyltransferase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TMH6_9CHLR
acetyl-CoA acetyltransferase Tax=RBG_16_Chloroflexi_68_14_curated
13_1_20cm_full_scaffold_2258_11
GWC2_Deltaproteobacteria_65_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8324..8851)
DNA (528bp) protein (176aa)
DNA-3-methyladenine glycosylase (EC:3.2.2.21); K03652 DNA-3-methyladenine glycosylase [EC:3.2.2.21] Tax=GWC2_Deltaproteobacteria_65_14_curated
Putative 3-methyladenine DNA glycosylase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HW14_9BACT
hypothetical protein
13_1_20cm_full_scaffold_2258_12
GWB2_Chloroflexi_54_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(8901..10343)
DNA (1443bp) protein (481aa)
Diguanilate cyclase n=1 Tax=Patulibacter medicamentivorans RepID=H0E457_9ACTN
GAF domain-containing sensor diguanylate cyclase Tax=GWB2_Chloroflexi_54_36_curated
GAF sensor-containing diguanylate cyclase
13_1_20cm_full_scaffold_2258_13
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

10420..11496
DNA (1077bp) protein (359aa)
fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:ACY48981.1}; EC=4.1.2.13 {ECO:0000313|EMBL:ACY48981.1};; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodoth
Fructose-bisphosphate aldolase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MD69_RHOM4 rbh
13_1_20cm_full_scaffold_2258_14

Not on your lists

11553..12182
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Leptonema illini DSM 21528 RepID=H2CJ23_9LEPT
Marine sediment metagenome DNA, contig: S01H1_S35489 {ECO:0000313|EMBL:GAG46798.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
hypothetical protein
13_1_20cm_full_scaffold_2258_15
unknown

Not on your lists

12245..12406
DNA (162bp) protein (54aa)

This feature has no annotations

13_1_20cm_full_scaffold_2258_16
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

12589..12807
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T847_CAUSK
hypothetical protein Tax=CSP1_4_Chloroflexi
hypothetical protein
13_1_20cm_full_scaffold_2258_17
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12804..13283
DNA (480bp) protein (160aa)
acetyltransferase (EC:2.3.1.-)
Putative acetyltransferase protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QQF1_9DELT
Putative acetyltransferase protein {ECO:0000313|EMBL:EPX58838.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;"
13_1_20cm_full_scaffold_2258_18
unknown

Not on your lists

13291..13578
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_20cm_full_scaffold_2258_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13575..14522)
DNA (948bp) protein (316aa)
Putative 5,10-methylenetetrahydromethanopterin reductase n=1 Tax=Streptomyces aurantiacus JA 4570 RepID=S3ZRF4_9ACTO
luciferase family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
luciferase family protein
13_1_20cm_full_scaffold_2258_20

Not on your lists

14565..15398
DNA (834bp) protein (278aa)
Putative Undecaprenyl-diphosphatase 2 (Undecaprenyl pyrophosphate phosphatase 2) (Bacitracin resistance protein 2) uppP2 {ECO:0000313|EMBL:CBH76245.1}; EC=3.6.1.27 {ECO:0000313|EMBL:CBH76245.1};; TaxI
uppP; UDP-diphosphatase (EC:3.6.1.27)
Putative Undecaprenyl-diphosphatase 2 (Undecaprenyl pyrophosphate phosphatase 2) (Bacitracin resistance protein 2) uppP2 n=1 Tax=mine drainage metagenome RepID=E6PIF5_9ZZZZ
13_1_20cm_full_scaffold_2258_21
unknown

Not on your lists

15398..15598
DNA (201bp) protein (67aa)

This feature has no annotations

13_1_20cm_full_scaffold_2258_22
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(15595..17106)
DNA (1512bp) protein (504aa)
Amine oxidase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TZ28_9CHLR
Amine oxidase {ECO:0000313|EMBL:EFH81818.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 4
hypothetical protein
13_1_20cm_full_scaffold_2258_23
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(17126..17632)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L3E9_THERP
hypothetical protein Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
hypothetical protein
13_1_20cm_full_scaffold_2258_24
RHI_RIF_OD1_01_48_17, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(17677..17829)
DNA (153bp) protein (51aa)
Single-stranded DNA-binding protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XTH2_9BACT
ssb; single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_01_48_17_curated
single-strand-binding protein
Displaying 24 items

View Taxonomy