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13_1_20cm_full_scaffold_375

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_full_scaffold_375_1
unknown

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1..126
DNA (126bp) protein (42aa)

This feature has no annotations

13_1_20cm_full_scaffold_375_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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152..1225
DNA (1074bp) protein (358aa)
ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-
Riboflavin biosynthesis protein RibD n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F3_GEMAT
riboflavin biosynthesis protein RibD
13_1_20cm_full_scaffold_375_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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1207..1818
DNA (612bp) protein (204aa)
riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] Tax=GWC2_Gemmatimonadetes_71_10_curated
ribE; riboflavin synthase alpha chain (EC:2.5.1.9)
Riboflavin synthase alpha chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F4_GEMAT
13_1_20cm_full_scaffold_375_4
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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1800..3005
DNA (1206bp) protein (402aa)
ribBA; 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II (EC:3.5.4.25 4.1.99.12); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
Riboflavin biosynthesis protein RibBA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F5_GEMAT
3,4-dihydroxy-2-butanone 4-phosphate synthase
13_1_20cm_full_scaffold_375_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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3053..3493
DNA (441bp) protein (147aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase; K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=GWC2_Gemmatimonadetes_71_10_curated
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WQB4_KYRT2
13_1_20cm_full_scaffold_375_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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3474..3887
DNA (414bp) protein (138aa)
N utilization substance protein B homolog n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=NUSB_SOLUE
nusB; antitermination protein NusB; K03625 N utilization substance protein B Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
N utilization substance protein B-like protein
13_1_20cm_full_scaffold_375_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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3884..4999
DNA (1116bp) protein (372aa)
putative glycosyltransferase (EC:2.4.-.-) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F8_GEMAT rbh
glycosyl transferase group 1
13_1_20cm_full_scaffold_375_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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5003..5326
DNA (324bp) protein (108aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_full_scaffold_375_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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5323..6291
DNA (969bp) protein (323aa)
hprK; HPr kinase/phosphorylase; K06023 HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
HPr kinase/phosphorylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F9_GEMAT
hprK; HPr kinase/phosphorylase
13_1_20cm_full_scaffold_375_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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6284..6664
DNA (381bp) protein (127aa)
phosphotransferase system enzyme IIA component; K02744 PTS system, N-acetylgalactosamine-specific IIA component [EC:2.7.1.69] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Phosphotransferase system enzyme IIA component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G0_GEMAT
phosphotransferase system enzyme IIA component
13_1_20cm_full_scaffold_375_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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6661..7134
DNA (474bp) protein (158aa)
Phosphotransferase system enzyme IIB component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G1_GEMAT
phosphotransferase system enzyme IIB component Tax=GWC2_Gemmatimonadetes_71_10_curated
phosphotransferase system enzyme IIB component
13_1_20cm_full_scaffold_375_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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7131..7808
DNA (678bp) protein (226aa)
Putative phosphotransferase system enzyme IIC component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G2_GEMAT
phosphotransferase system PTS sorbose-specific IIC subunit
Phosphotransferase system PTS sorbose-specific IIC subunit {ECO:0000313|EMBL:AHG90661.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_20cm_full_scaffold_375_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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7805..8578
DNA (774bp) protein (258aa)
Phosphotransferase system enzyme IID component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G3_GEMAT
phosphotransferase system enzyme IID component; K02796 PTS system, mannose-specific IID component Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PTS system mannose/fructose/sorbose family IID component
13_1_20cm_full_scaffold_375_14
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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8569..8910
DNA (342bp) protein (114aa)
ptsH; phosphocarrier protein HPr; K11189 phosphocarrier protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Phosphotransferase system, phosphocarrier protein HPr alias=gwe2_scaffold_515_9 id=2070136 tax=TA06 species=Chthoniobacter flavus Ellin428 genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia
ptsH; phosphocarrier protein HPr
13_1_20cm_full_scaffold_375_15
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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8907..10709
DNA (1803bp) protein (601aa)
ptsI; phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G5_GEMAT
13_1_20cm_full_scaffold_375_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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10729..11955
DNA (1227bp) protein (409aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, E
S-adenosylmethionine synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G6_GEMAT
S-adenosylmethionine synthase
13_1_20cm_full_scaffold_375_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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11952..13295
DNA (1344bp) protein (448aa)
adenosylhomocysteinase (EC:3.3.1.1)
Adenosylhomocysteinase n=1 Tax=delta proteobacterium NaphS2 RepID=D8FF04_9DELT
adenosylhomocysteinase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_20cm_full_scaffold_375_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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13277..13804
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G7_GEMAT
hypothetical protein; K08999 hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
protein of unknown function DUF151
13_1_20cm_full_scaffold_375_19
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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13932..14732
DNA (801bp) protein (267aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_20cm_full_scaffold_375_20
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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14997..15884
DNA (888bp) protein (296aa)
ABC transporter substrate binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G9_GEMAT
ABC transporter substrate-binding protein; K02016 iron complex transport system substrate-binding protein Tax=GWC2_Gemmatimonadetes_71_10_curated
ABC transporter substrate-binding protein
13_1_20cm_full_scaffold_375_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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15881..16822
DNA (942bp) protein (314aa)
Putative vitamin B12 transport protein BtuC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5M8_GEMAT
transmembrane ABC transporter protein,permease; K02015 iron complex transport system permease protein Tax=GWC2_Gemmatimonadetes_71_10_curated
btuD; putative vitamin B12 transport protein BtuC
13_1_20cm_full_scaffold_375_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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16807..17610
DNA (804bp) protein (268aa)
btuC; putative vitamin B12 transport protein BtuD; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative vitamin B12 transport protein BtuD n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5M7_GEMAT
btuC; putative vitamin B12 transport protein BtuD
13_1_20cm_full_scaffold_375_23
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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17607..18050
DNA (444bp) protein (148aa)
ligand-gated channel n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B501C2
TonB-dependent outer membrane receptor for cobalamin and Fe transport Tax=GWC2_Gemmatimonadetes_71_10_curated
TonB-dependent receptor
Displaying 23 items

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