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13_1_20cm_2_scaffold_2491

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_2491_1
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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1..1011
DNA (1011bp) protein (337aa)
vitamin-B12 independent methionine synthase; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
Putative cobalamin-independent methionine synthase II n=1 Tax=uncultured bacterium RepID=A3RGY4_9BACT rbh
Putative 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase (Cobalamin-independent methionine synthase)
13_1_20cm_2_scaffold_2491_2
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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1073..1513
DNA (441bp) protein (147aa)
DoxX n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AXK4_RUBXD
DoxX {ECO:0000313|EMBL:ABG03874.1}; Flags: Precursor;; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrob
DoxX
13_1_20cm_2_scaffold_2491_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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1572..2759
DNA (1188bp) protein (396aa)
Receptor family ligand-binding protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8F7F9_9DELT
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
extracellular ligand-binding receptor
13_1_20cm_2_scaffold_2491_4
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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2763..3524
DNA (762bp) protein (254aa)
ABC transporter related protein n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RFJ6_ARCPA
ABC transporter related protein {ECO:0000313|EMBL:ADB58890.1}; TaxID=572546 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus pro
ABC transporter
13_1_20cm_2_scaffold_2491_5
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3588..4172
DNA (585bp) protein (195aa)
Ribosomal protein S4 n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RKM8_9RHIZ
Ribosomal protein S4 {ECO:0000313|EMBL:ESR23815.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1
13_1_20cm_2_scaffold_2491_6
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4289..5155)
DNA (867bp) protein (289aa)
Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Prosthecochloris aestuarii (strain DSM 271 / SK 413) RepID=B4S478_PROA2
monofunctional biosynthetic peptidoglycan transglycosylase Tax=RBG_13_Deltaproteobacteria_61_14_curated
monofunctional biosynthetic peptidoglycan transglycosylase
13_1_20cm_2_scaffold_2491_7
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5220..5639)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2IN42_9PROT
hypothetical protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
hypothetical protein
13_1_20cm_2_scaffold_2491_8
R_RIF_OD1_13_59_16, RIF-OD1-13, Parcubacteria, Bacteria

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5769..6848
DNA (1080bp) protein (360aa)
DNA-directed DNA polymerase (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_13_59_16_curated
DNA-directed DNA polymerase (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7] alias=ACD81_C00067G00015,ACD81_54.20365.55G0015,ACD81_54.20365.55_15 id=133950 tax=ACD81 species=Methanoculleus marisnigri genus=Methanoculleus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota organism_group=OD1, not OD1-i organism_desc=OD1
DNA-directed DNA polymerase (EC:2.7.7.7)
13_1_20cm_2_scaffold_2491_9
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6886..7035)
DNA (150bp) protein (50aa)
transporter n=1 Tax=Bradyrhizobium japonicum RepID=UPI00035D73AE
Uncharacterized protein {ECO:0000313|EMBL:AHY55300.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium jap
hypothetical protein
13_1_20cm_2_scaffold_2491_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7344..8330
DNA (987bp) protein (329aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component n=1 Tax=Synechococcus sp. PCC 7502 RepID=K9SXJ7_9SYNE
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
13_1_20cm_2_scaffold_2491_11
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8358..9077
DNA (720bp) protein (240aa)
ABC transporter related n=1 Tax=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) RepID=B8DRZ3_DESVM
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
ABC transporter
13_1_20cm_2_scaffold_2491_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

9074..9967
DNA (894bp) protein (298aa)
Amino acid or sugar ABC transport system, permease protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8F7F8_9DELT
branched-chain amino acid ABC superfamily ATP binding cassette transporter; K01997 branched-chain amino acid transport system permease protein Tax=CSP1_6_Rokubacteria
branched-chain amino acid ABC transporter permease
13_1_20cm_2_scaffold_2491_13
CSP1_5_NC10, NC10, Bacteria

Not on your lists

9946..12642
DNA (2697bp) protein (899aa)
Diguanylate cyclase (GGDEF domain) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSI9_9PROT rbh
diguanylate cyclase Tax=CSP1_5_NC10
diguanylate cyclase
13_1_20cm_2_scaffold_2491_14
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(12650..13414)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBC7_NITMU
hypothetical protein Tax=CSP1_5_NC10
hypothetical protein
13_1_20cm_2_scaffold_2491_15
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13598..15307)
DNA (1710bp) protein (570aa)
thiamine pyrophosphate protein domain-containing protein TPP-binding protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Thiamine pyrophosphate protein domain protein TPP-binding protein n=1 Tax=Streptomyces sp. SirexAA-E RepID=G2NN34_9ACTO
thiamine pyrophosphate protein domain-containing protein TPP-binding protein
13_1_20cm_2_scaffold_2491_16
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15342..15581)
DNA (240bp) protein (80aa)
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
13_1_20cm_2_scaffold_2491_17
unknown

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15860..16135
DNA (276bp) protein (92aa)

This feature has no annotations

Displaying 17 items

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