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13_1_20cm_2_scaffold_4896

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Displaying 29 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_4896_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..603)
DNA (603bp) protein (201aa)
hydantoinase/carbamoylase amidase (EC:3.5.1.87); K06016 N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.87] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
allantoate amidohydrolase (EC:3.5.1.87)
Amidase, hydantoinase/carbamoylase family n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BV55_9GAMM
13_1_20cm_2_scaffold_4896_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

698..1894
DNA (1197bp) protein (399aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C151_SPHTD
acyl-CoA dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
acyl-CoA dehydrogenase domain-containing protein
13_1_20cm_2_scaffold_4896_3
unknown

Not on your lists

comp(2140..2457)
DNA (318bp) protein (106aa)

This feature has no annotations

13_1_20cm_2_scaffold_4896_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

2475..3071
DNA (597bp) protein (199aa)
putative acyl-CoA dehydrogenase (EC:1.3.99.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Acyl-CoA dehydrogenase domain protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C152_SPHTD
acyl-CoA dehydrogenase domain-containing protein
13_1_20cm_2_scaffold_4896_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3193..4005
DNA (813bp) protein (271aa)
Metallo-beta-lactamase family protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MT48_CORCM
NUDIX hydrolase Tax=GWA2_Rokubacteria_73_35_curated
gloB; metallo-beta-lactamase family protein
13_1_20cm_2_scaffold_4896_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

4011..4301
DNA (291bp) protein (97aa)
Benzoate-CoA ligase family n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TQ19_9CHLR
benzoate-CoA ligase family Tax=GWA2_Rokubacteria_70_23_curated
caiC; AMP-dependent synthetase and ligase
13_1_20cm_2_scaffold_4896_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4301..4732
DNA (432bp) protein (144aa)
putative 4-hydroxybenzoyl-CoA thioesterase; K01075 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative 4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VG57_9RHOB
4-hydroxybenzoyl-CoA thioesterase
13_1_20cm_2_scaffold_4896_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

4725..5555
DNA (831bp) protein (277aa)
extradiol ring-cleavage dioxygenase class III protein subunit B; K00455 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15] Tax=GWA2_Rokubacteria_70_23_curated
Extradiol ring-cleavage dioxygenase class III protein subunit B n=3 Tax=Geobacillus RepID=C9S1R8_GEOSY
extradiol ring-cleavage dioxygenase class III protein subunit B
13_1_20cm_2_scaffold_4896_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5665..6843
DNA (1179bp) protein (393aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=SAR116 cluster alpha proteobacterium HIMB100 RepID=G5ZWH5_9PROT rbh
conserved exported hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein
13_1_20cm_2_scaffold_4896_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6908..7822
DNA (915bp) protein (305aa)
Branched-chain amino acid ABC-type transport system, permease component n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YBJ3_9BRAD
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC transporter permease
13_1_20cm_2_scaffold_4896_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7827..8774
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=SAR324 cluster bacterium SCGC AB-629-O05 RepID=UPI000378F703 rbh
putative branched-chain amino acid ABC transporter, permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
branched-chain amino acid ABC transporter, permease protein
13_1_20cm_2_scaffold_4896_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8767..9522
DNA (756bp) protein (252aa)
Branched-chain amino acid ABC transporter,ATP-binding component n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AIU8_AZOBR
branched-chain amino acid ABC transporter,ATP-binding component Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
branched-chain amino acid ABC transporter,ATP-binding component
13_1_20cm_2_scaffold_4896_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

9522..10223
DNA (702bp) protein (234aa)
Putative branched-chain amino acid ABC transporter, ATP-binding protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TUD2_9BRAD rbh
putative branched-chain amino acid ABC transporter ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
putative branched-chain amino acid ABC transporter ATP-binding protein
13_1_20cm_2_scaffold_4896_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10353..11123
DNA (771bp) protein (257aa)
Metallo-beta-lactamase superfamily protein n=1 Tax=uncultured bacterium CSL144 RepID=G4WVQ3_9BACT
metallo-beta-lactamase family-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hydroxyacylglutathione hydrolase
13_1_20cm_2_scaffold_4896_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11124..11846)
DNA (723bp) protein (241aa)
Peptidase C26 n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RGI6_MOOTA
Predicted glutamine amidotransferases Tax=GWA2_Rokubacteria_73_35_curated
peptidase C26
13_1_20cm_2_scaffold_4896_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11919..13661
DNA (1743bp) protein (581aa)
gamma-glutamyltranspeptidase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative gamma-glutamyltranspeptidase n=2 Tax=Bordetella bronchiseptica RepID=K0MZX3_BORBM
gamma-glutamyltranspeptidase
13_1_20cm_2_scaffold_4896_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13788..14420)
DNA (633bp) protein (211aa)
Integral membrane protein TerC n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC43_9BACT
integral membrane protein TerC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
YjbE family integral membrane protein
13_1_20cm_2_scaffold_4896_18
unknown

Not on your lists

comp(14432..14527)
DNA (96bp) protein (32aa)

This feature has no annotations

13_1_20cm_2_scaffold_4896_19
unknown

Not on your lists

comp(14606..14950)
DNA (345bp) protein (115aa)

This feature has no annotations

13_1_20cm_2_scaffold_4896_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(14976..16172)
DNA (1197bp) protein (399aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Burkholderia sp. SJ98 RepID=K8RDC2_9BURK
L-carnitine dehydratase/bile acid-inducible protein F Tax=GWA2_Rokubacteria_70_23_curated
L-carnitine dehydratase/bile acid-inducible protein F
13_1_20cm_2_scaffold_4896_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16169..16588)
DNA (420bp) protein (140aa)
MaoC-like dehydratase n=1 Tax=Gordonia terrae C-6 RepID=R7YFL5_9ACTO
acyl dehydratase MaoC Tax=GWA2_Rokubacteria_73_35_curated
acyl dehydratase MaoC
13_1_20cm_2_scaffold_4896_22
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(16600..17352)
DNA (753bp) protein (251aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZ80_STAND
binding-protein-dependent transporters inner membrane component Tax=RBG_16_NC10_65_8_curated
binding-protein-dependent transporters inner membrane component
13_1_20cm_2_scaffold_4896_23
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(17397..18251)
DNA (855bp) protein (285aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZ81_STAND
binding-protein-dependent transporters inner membrane component; K02025 multiple sugar transport system permease protein Tax=RBG_16_NC10_65_8_curated
binding-protein-dependent transporters inner membrane component
13_1_20cm_2_scaffold_4896_24
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(18463..19779)
DNA (1317bp) protein (439aa)
Extracellular solute-binding protein family 1 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZ82_STAND
family 1 extracellular solute-binding protein Tax=RBG_16_NC10_65_8_curated
family 1 extracellular solute-binding protein
13_1_20cm_2_scaffold_4896_25
unknown

Not on your lists

comp(20136..20399)
DNA (264bp) protein (88aa)

This feature has no annotations

13_1_20cm_2_scaffold_4896_26
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

20571..21557
DNA (987bp) protein (329aa)
Polysaccharide deacetylase n=1 Tax=uncultured archaeon GZfos1D1 RepID=Q64CN2_9ARCH
peptidase C14 caspase catalytic subunit p20 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
wd40 repeat, subgroup
13_1_20cm_2_scaffold_4896_27
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(21569..22090)
DNA (522bp) protein (174aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NM66_ROSCS
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
hypothetical protein
13_1_20cm_2_scaffold_4896_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22176..23453)
DNA (1278bp) protein (426aa)
Major facilitator superfamily MFS_1 n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IS45_9GAMM
sugar phosphate permease Tax=GWA2_Rokubacteria_73_35_curated
sugar phosphate permease
13_1_20cm_2_scaffold_4896_29
unknown

Not on your lists

comp(23671..23748)
DNA (78bp) protein (26aa)

This feature has no annotations

Displaying 29 items

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