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13_1_20cm_2_scaffold_815

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_815_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3..728)
DNA (726bp) protein (242aa)
NADH dehydrogenase subunit G n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B681AB
Molybdopterin oxidoreductase Fe4S4 region Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
nuoG; NADH dehydrogenase I subunit G
13_1_20cm_2_scaffold_815_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(923..2149)
DNA (1227bp) protein (409aa)
NADH-quinone oxidoreductase subunit F (EC:1.6.99.5); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH-quinone oxidoreductase F subunit (51 kDa) n=1 Tax=uncultured bacterium RepID=D6CJW2_9BACT
NADH dehydrogenase I subunit F
13_1_20cm_2_scaffold_815_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2146..2631)
DNA (486bp) protein (162aa)
NADH-quinone oxidoreductase subunit E; K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH dehydrogenase I subunit E n=1 Tax=uncultured prokaryote RepID=H5SP85_9ZZZZ
NADH-quinone oxidoreductase subunit E
13_1_20cm_2_scaffold_815_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2628..4004)
DNA (1377bp) protein (459aa)
NADH dehydrogenase I subunit D (EC:1.6.99.5); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NADH dehydrogenase subunit D n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B62217
NADH dehydrogenase I subunit D
13_1_20cm_2_scaffold_815_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4004..4501)
DNA (498bp) protein (166aa)
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NADH dehydrogenase subunit C n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B64C63
NADH (or F420H2) dehydrogenase subunit C
13_1_20cm_2_scaffold_815_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(4618..5076)
DNA (459bp) protein (153aa)
nuoB1_[H]; NADH-ubiquinone oxidoreductase chain B (EC:1.6.5.3) Tax=GWA2_Rokubacteria_70_23_curated
NADH dehydrogenase subunit B (EC:1.6.99.5)
NADH dehydrogenase subunit B n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B3F63A
13_1_20cm_2_scaffold_815_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5067..5420)
DNA (354bp) protein (118aa)
nuoA; NADH-quinone oxidoreductase subunit A (NADH dehydrogenase I, chain A) (NDH-1, chain A) (EC:1.6.99.5 1.6.5.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH:ubiquinone oxidoreductase subunit 3 (chain A) (EC:1.6.5.3)
NADH:ubiquinone oxidoreductase subunit A n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B54E6D
13_1_20cm_2_scaffold_815_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5417..6331)
DNA (915bp) protein (305aa)
lipA; lipoyl synthase (EC:2.8.1.8); K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lipA; lipoyl synthase (EC:2.8.1.8)
Lipoyl synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D3_GEMAT
13_1_20cm_2_scaffold_815_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6406..6642
DNA (237bp) protein (79aa)
LemA family protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3Q9Z6_RHOPT
hypothetical protein; K03744 LemA protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
LemA family protein
13_1_20cm_2_scaffold_815_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6931..7791)
DNA (861bp) protein (287aa)
Peptide ABC transporter, membrane protein n=2 Tax=Geobacter metallireducens RepID=Q39WA2_GEOMG rbh
peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
peptide ABC transporter membrane protein
13_1_20cm_2_scaffold_815_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7796..8788)
DNA (993bp) protein (331aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QFX3_DESB2
ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
binding-protein-dependent transport system inner membrane protein
13_1_20cm_2_scaffold_815_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(8994..10643)
DNA (1650bp) protein (550aa)
Oligopeptide-binding protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LVZ1_SYNAS
ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
peptide-binding protein
13_1_20cm_2_scaffold_815_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10644..10955)
DNA (312bp) protein (104aa)
Preprotein translocase, SecG subunit n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EF42_GEOBB
secG; preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
preprotein translocase subunit SecG
13_1_20cm_2_scaffold_815_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(10955..11737)
DNA (783bp) protein (261aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
tpiA; triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8EAJ5_9FIRM
13_1_20cm_2_scaffold_815_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11737..12921)
DNA (1185bp) protein (395aa)
phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=PGK_MOOTA
13_1_20cm_2_scaffold_815_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12938..13942)
DNA (1005bp) protein (335aa)
cbbG; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cbbG; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ64_9BACT
13_1_20cm_2_scaffold_815_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13989..14741)
DNA (753bp) protein (251aa)
Phosphoribosyltransferase n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UM81_ANASK
phosphoribosyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
phosphoribosyltransferase
13_1_20cm_2_scaffold_815_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14763..15710)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC96_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_20cm_2_scaffold_815_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15763..16128)
DNA (366bp) protein (122aa)
Transcriptional regulators, TraR/DksA family n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ60_9BACT
transcriptional regulators, TraR/DksA family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcriptional regulators, TraR/DksA family
13_1_20cm_2_scaffold_815_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(16207..16563)
DNA (357bp) protein (119aa)
Ribosomal silencing factor RsfS n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J7H3_DESRM
iojap family protein; K09710 ribosome-associated protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
iojap family protein
13_1_20cm_2_scaffold_815_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16560..17210)
DNA (651bp) protein (217aa)
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:3.5.4.4); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:3.5.4.4)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=NADD_ROSS1
13_1_20cm_2_scaffold_815_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17213..18469)
DNA (1257bp) protein (419aa)
proA; gamma-glutamyl phosphate reductase; K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Gamma-glutamyl phosphate reductase n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7TE42_DESML
gamma-glutamyl phosphate reductase
13_1_20cm_2_scaffold_815_23
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(18487..19503)
DNA (1017bp) protein (339aa)
gamma-glutamyl kinase (EC:2.7.2.11); K00931 glutamate 5-kinase [EC:2.7.2.11] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Glutamate 5-kinase n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RAT1_AMMDK
gamma-glutamyl kinase
Displaying 23 items

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