ggKbase home page

13_1_20cm_2_scaffold_624

Search features with annotation key words

Displaying 25 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_624_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


1..189
DNA (189bp) protein (63aa)
50S ribosomal protein L13 n=1 Tax=Thermincola potens (strain JR) RepID=D5XAB8_THEPJ
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L13
13_1_20cm_2_scaffold_624_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


189..587
DNA (399bp) protein (133aa)
30S ribosomal protein S9 n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGN9_CHLTF
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S9
13_1_20cm_2_scaffold_624_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

641..1654
DNA (1014bp) protein (338aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] Tax=GWA2_Rokubacteria_73_35_curated
argC; n-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PGS4_9BACT
13_1_20cm_2_scaffold_624_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

1659..2876
DNA (1218bp) protein (406aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_cur
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1)
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CP37_DESK7
13_1_20cm_2_scaffold_624_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


3041..3811
DNA (771bp) protein (257aa)
30S ribosomal protein S2 n=3 Tax=Alicyclobacillus acidocaldarius RepID=C8WWH4_ALIAD
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S2
13_1_20cm_2_scaffold_624_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

3814..4422
DNA (609bp) protein (203aa)
Elongation factor Ts n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=EFTS_DICT6
translation elongation factor Ts; K02357 elongation factor Ts Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
tsf; elongation factor Ts
13_1_20cm_2_scaffold_624_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4425..5165
DNA (741bp) protein (247aa)
pyrH; uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7W6_GEOUR rbh
13_1_20cm_2_scaffold_624_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5169..5723
DNA (555bp) protein (185aa)
Ribosome-recycling factor n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JXI1_DESFR
ribosome recycling factor; K02838 ribosome recycling factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ribosome recycling factor
13_1_20cm_2_scaffold_624_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5747..6544
DNA (798bp) protein (266aa)
uppS; UDP pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
uppS; UDP pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase n=1 Tax=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) RepID=C0ZF62_BREBN
13_1_20cm_2_scaffold_624_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6541..7716
DNA (1176bp) protein (392aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A3A1_PELCD
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase
13_1_20cm_2_scaffold_624_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7713..9080
DNA (1368bp) protein (456aa)
rseP; regulator of sigma E protease (EC:3.4.24.-); K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rseP; regulator of sigma E protease (EC:3.4.24.-)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALE23 RepID=UPI0003792C05
13_1_20cm_2_scaffold_624_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9090..9566
DNA (477bp) protein (159aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJF6_9BACT
13_1_20cm_2_scaffold_624_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9563..11230
DNA (1668bp) protein (556aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
hypothetical protein n=1 Tax=unclassified candidate division EM 19 RepID=UPI0003805964 rbh
13_1_20cm_2_scaffold_624_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11230..11562
DNA (333bp) protein (111aa)
Ferredoxin n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIE9_CHLTF
ferredoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ferredoxin
13_1_20cm_2_scaffold_624_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


11565..13259
DNA (1695bp) protein (565aa)
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJF7_9BACT
13_1_20cm_2_scaffold_624_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13371..13838
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP n=1 Tax=Spiribacter salinus M19-40 RepID=R4VMD9_9GAMM
hypothetical protein; K09748 ribosome maturation factor RimP Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ribosome maturation protein RimP
13_1_20cm_2_scaffold_624_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13863..15185
DNA (1323bp) protein (441aa)
NusA antitermination factor n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R8X9_AMMDK
NusA antitermination factor; K02600 N utilization substance protein A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NusA antitermination factor
13_1_20cm_2_scaffold_624_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15613..18093
DNA (2481bp) protein (827aa)
Translation initiation factor IF-2 n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKK2_9BACT
translation initiation factor IF-2; K02519 translation initiation factor IF-2 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
infB; translation initiation factor IF-2
13_1_20cm_2_scaffold_624_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

18116..18406
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKK3_9BACT
infB; translation initiation factor IF-2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein
13_1_20cm_2_scaffold_624_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18406..18759
DNA (354bp) protein (118aa)
Ribosome-binding factor A n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C376_SPHTD
ribosome-binding factor A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ribosome-binding factor A
13_1_20cm_2_scaffold_624_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

18756..19763
DNA (1008bp) protein (336aa)
Exopolyphosphatase-related proteins n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D2S2_PELTS
exopolyphosphatase-related proteins; K06881 phosphoesterase RecJ domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
exopolyphosphatase-related proteins
13_1_20cm_2_scaffold_624_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19760..20695
DNA (936bp) protein (312aa)
tRNA pseudouridine synthase b; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=GWA2_Rokubacteria_73_35_curated
tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B n=1 Tax=Thioalkalivibrio sp. ARh3 RepID=UPI00035EFE2E
13_1_20cm_2_scaffold_624_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20658..21575
DNA (918bp) protein (306aa)
FMN adenylyltransferase; riboflavin kinase (EC:2.7.7.2 2.7.1.26); K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
FMN adenylyltransferase; riboflavin kinase (EC:2.7.1.26 2.7.7.2)
Riboflavin kinase/FMN adenylyltransferase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6NXQ5_9FIRM
13_1_20cm_2_scaffold_624_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


21703..21972
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=zeta proteobacterium SCGC AB-137-C09 RepID=UPI0003622E2E
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S15
13_1_20cm_2_scaffold_624_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22043..23410
DNA (1368bp) protein (456aa)
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKK9_9BACT
Displaying 25 items

View Taxonomy