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13_1_20cm_2_scaffold_12393

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Displaying 17 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_12393_1
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(1..369)
DNA (369bp) protein (123aa)
GTPase Obg n=2 Tax=Mesotoga RepID=I2F3V0_9THEM
GTPase obg; K03979 GTP-binding protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Obg family GTPase CgtA
13_1_20cm_2_scaffold_12393_2
BJP_IG2158_Thermincola_46_17, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(458..760)
DNA (303bp) protein (101aa)
50S ribosomal protein L27 n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VK76_9CYAN
LSU ribosomal protein L27P
Tax=BJP_IG2158_Thermincola_46_17
13_1_20cm_2_scaffold_12393_3
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(761..1282)
DNA (522bp) protein (174aa)
50S ribosomal protein L21 n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TNN8_9CHLR
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; S
rplU; 50S ribosomal protein L21
13_1_20cm_2_scaffold_12393_4
unknown

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1364..1570
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_20cm_2_scaffold_12393_5
unknown

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comp(1571..2380)
DNA (810bp) protein (270aa)

This feature has no annotations

13_1_20cm_2_scaffold_12393_6
unknown

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comp(2377..3420)
DNA (1044bp) protein (348aa)

This feature has no annotations

13_1_20cm_2_scaffold_12393_7
unknown

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comp(3410..3952)
DNA (543bp) protein (181aa)

This feature has no annotations

13_1_20cm_2_scaffold_12393_8
unknown

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comp(3949..5595)
DNA (1647bp) protein (549aa)

This feature has no annotations

13_1_20cm_2_scaffold_12393_9
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5713..8280)
DNA (2568bp) protein (856aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|H
Valine--tRNA ligase n=2 Tax=Geobacter metallireducens RepID=Q39X26_GEOMG
valS; valyl-tRNA ligase
13_1_20cm_2_scaffold_12393_10
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8400..9197)
DNA (798bp) protein (266aa)
Short-chain dehydrogenase/reductase n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0KEY0_SACES
Short-chain dehydrogenase/reductase {ECO:0000313|EMBL:CCH35068.1}; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espana
Short-chain dehydrogenase/reductase
13_1_20cm_2_scaffold_12393_11
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(9452..10489)
DNA (1038bp) protein (346aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Thermoanaerobacter wiegelii Rt8.B1 RepID=G2MV10_9THEO
clpX; ATP-dependent protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX Tax=RBG_16_RIF_CHLX_72_14_curated
clpX; ATP-dependent protease ATP-binding subunit ClpX
13_1_20cm_2_scaffold_12393_12
Nesterenkonia sp. F, Nesterenkonia, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(10508..10702)
DNA (195bp) protein (65aa)
ATP-dependent protease n=1 Tax=Nesterenkonia sp. F RepID=UPI000255D586
13_1_20cm_2_scaffold_12393_13
Selenomonas sp. oral taxon 149, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(10699..11313)
DNA (615bp) protein (205aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopep
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Selenomonas sp. oral taxon 149 str. 67H29BP RepID=E0NY34_9FIRM
13_1_20cm_2_scaffold_12393_14
Clostridium sp. CAG:470, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11366..12193)
DNA (828bp) protein (276aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-R
Trigger factor n=1 Tax=Clostridium sp. CAG:470 RepID=R7FIC7_9CLOT
trigger factor
13_1_20cm_2_scaffold_12393_15
R_SM2F11_45_18, SM2F11, Bacteria

Not on your lists

comp(12639..14738)
DNA (2100bp) protein (700aa)
Putative penicillin-binding protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I946_CALAS
1A family penicillin-binding protein Tax=RIFCSPHIGHO2_01_FULL_SM2F11_45_18_curated
putative penicillin-binding protein
13_1_20cm_2_scaffold_12393_16
unknown

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comp(15066..15542)
DNA (477bp) protein (159aa)

This feature has no annotations

13_1_20cm_2_scaffold_12393_17
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(15622..16785)
DNA (1164bp) protein (388aa)
Transporter, major facilitator family protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MIU3_9BACT
major facilitator superfamily protein Tax=RBG_16_Armatimonadetes_67_12_curated
major facilitator superfamily protein
Displaying 17 items

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