ggKbase home page

13_1_20cm_2_scaffold_3848

Search features with annotation key words

Displaying 27 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_3848_1
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

1..636
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZU6_CALAS
Uncharacterized protein {ECO:0000313|EMBL:BAL98533.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 1
hypothetical protein
13_1_20cm_2_scaffold_3848_2
uncultured planctomycete, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(622..1884)
DNA (1263bp) protein (421aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=120965 species="Bacteria; Plan
puuE; 4-aminobutyrate aminotransferase (EC:2.6.1.19)
Acetylornithine aminotransferase n=1 Tax=uncultured planctomycete RepID=H5SE94_9BACT
13_1_20cm_2_scaffold_3848_3
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

1899..2429
DNA (531bp) protein (177aa)
GCN5-related N-acetyltransferase n=1 Tax=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) RepID=D9TNY1_THETC
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADL67719.1}; TaxID=580327 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Therm
GCN5-like N-acetyltransferase
13_1_20cm_2_scaffold_3848_4
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2426..3610)
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D227_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:BAL06860.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium ja
hypothetical protein
13_1_20cm_2_scaffold_3848_5
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(3679..4122)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U1H5_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:EFH82619.1}; Flags: Precursor;; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="
13_1_20cm_2_scaffold_3848_6
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(4119..4652)
DNA (534bp) protein (178aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NFT0_ROSCS
Uncharacterized protein {ECO:0000313|EMBL:ABU56311.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus cas
hypothetical protein
13_1_20cm_2_scaffold_3848_7
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(4616..5458)
DNA (843bp) protein (281aa)
Rhodanese domain protein n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBQ5_THET1
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
Rhodanese domain-containing protein
13_1_20cm_2_scaffold_3848_8
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

5580..6512
DNA (933bp) protein (311aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] Tax=RBG_16_Armatimonadetes_67_12_curated
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P3N2_9BACT
13_1_20cm_2_scaffold_3848_9
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6495..7160)
DNA (666bp) protein (222aa)
HAD family hydrolase n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1HZJ4_9PSEU
HAD family hydrolase {ECO:0000313|EMBL:EOD63684.1}; TaxID=1292037 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 44
HAD family hydrolase
13_1_20cm_2_scaffold_3848_10
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(7167..7487)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI00037F8C2E
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
hypothetical protein
13_1_20cm_2_scaffold_3848_11
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(7505..8200)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003773EF5 rbh
Uncharacterized protein {ECO:0000313|EMBL:AEU38831.1}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC B
hypothetical protein
13_1_20cm_2_scaffold_3848_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8211..8639)
DNA (429bp) protein (143aa)
Transcriptional regulator, Fur family n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SS46_CLOPS
Transcriptional regulator, Fur family {ECO:0000313|EMBL:ABG86060.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringe
FUR family transcriptional regulator
13_1_20cm_2_scaffold_3848_13
Paenibacillus sabinae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8654..9703)
DNA (1050bp) protein (350aa)
Xaa-Pro dipeptidase/Xaa-Pro aminopeptidase n=1 Tax=Brevibacillus agri BAB-2500 RepID=L5MQV9_9BACL
Xaa-Pro dipeptidase (X-Pro dipeptidase) {ECO:0000313|EMBL:AHV96215.1}; TaxID=1268072 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sabina
Xaa-Pro dipeptidase (X-Pro dipeptidase)
13_1_20cm_2_scaffold_3848_14
MPI_Anaerolineae_49_20, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(9750..10211)
DNA (462bp) protein (154aa)
transcription elongation factor GreA n=1 Tax=Kurthia massiliensis RepID=UPI000288F070
Transcription elongation factor GreA Tax=MPI_Anaerolineae_49_20
greA; transcription elongation factor GreA
13_1_20cm_2_scaffold_3848_15
unknown

Not on your lists

10292..10723
DNA (432bp) protein (144aa)

This feature has no annotations

13_1_20cm_2_scaffold_3848_16
unknown

Not on your lists

comp(10731..13283)
DNA (2553bp) protein (851aa)

This feature has no annotations

13_1_20cm_2_scaffold_3848_17
Gordonia araii, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13280..13786)
DNA (507bp) protein (169aa)
Putative RNA polymerase ECF-type sigma factor n=1 Tax=Gordonia araii NBRC 100433 RepID=G7H2K2_9ACTO
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAB10077.1}; TaxID=1073574 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia araii NBRC 1
RNA polymerase sigma-70 factor, ECF subfamily
13_1_20cm_2_scaffold_3848_18
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(13855..14511)
DNA (657bp) protein (219aa)
Glycerophosphoryl diester phosphodiesterase family protein n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SDZ3_9BACL
glycerophosphodiester phosphodiesterase Tax=CSP1_3_Armatimonadetes
glycerophosphodiester phosphodiesterase
13_1_20cm_2_scaffold_3848_19
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

14700..16100
DNA (1401bp) protein (467aa)
Magnesium chelatase subunit ChlI n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U6I7_9CHLR
Magnesium chelatase subunit ChlI {ECO:0000313|EMBL:EFH80598.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobac
magnesium protoporphyrin chelatase
13_1_20cm_2_scaffold_3848_20
unknown

Not on your lists

comp(16179..16376)
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_20cm_2_scaffold_3848_21
unknown

Not on your lists

16476..17003
DNA (528bp) protein (176aa)

This feature has no annotations

13_1_20cm_2_scaffold_3848_22
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

17122..17571
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C2F3_SPHTD
Uncharacterized protein {ECO:0000313|EMBL:ACZ38420.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" sourc
hypothetical protein
13_1_20cm_2_scaffold_3848_23
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17647..18159
DNA (513bp) protein (171aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XE38_NAKMY
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACV79741.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multi
ECF subfamily RNA polymerase sigma-24 subunit
13_1_20cm_2_scaffold_3848_24
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18143..19246
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RIP2_BLASD
Uncharacterized protein {ECO:0000313|EMBL:CCG02236.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strai
hypothetical protein
13_1_20cm_2_scaffold_3848_25
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

19271..20230
DNA (960bp) protein (320aa)
ABC transporter related protein n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SC46_GEOOG
ABC transporter; K01990 ABC-2 type transport system ATP-binding protein Tax=GWC2_RIF_CHLX_73_18_curated
ABC transporter
13_1_20cm_2_scaffold_3848_26
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

20230..21093
DNA (864bp) protein (288aa)
ABC-type transport system involved in multi-copper enzyme maturation, permease component n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EWK7_MODMB
multi-copper enzyme maturation ABC transporter permease Tax=GWC2_RIF_CHLX_73_18_curated
multi-copper enzyme maturation ABC transporter permease
13_1_20cm_2_scaffold_3848_27
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21226..22008
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Micromonospora sp. (strain L5) RepID=E8SAM9_MICSL
Uncharacterized protein {ECO:0000313|EMBL:ADL48995.1}; TaxID=644283 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strai
hypothetical protein
Displaying 27 items

View Taxonomy