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13_1_20cm_2_scaffold_3141

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Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_3141_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(3..1187)
DNA (1185bp) protein (395aa)
hypothetical protein n=2 Tax=unclassified Aminicenantes RepID=UPI0003B671DB
O-antigen polymerase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
O-antigen polymerase
13_1_20cm_2_scaffold_3141_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

1246..3309
DNA (2064bp) protein (688aa)
thimet oligopeptidase (EC:3.4.24.15); K01392 thimet oligopeptidase [EC:3.4.24.15] Tax=RBG_16_RIF_WS3X_71_46_curated
Peptidase, M3 (Thimet oligopeptidase) family n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q092H8_STIAD alias=16ft_combo_ws3_scaffold_11273_10 id=5223347 tax=16ft_combo_ws3 species=Stigmatella aurantiaca (strain DW4/3-1) genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria
M3 family peptidase
13_1_20cm_2_scaffold_3141_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(3304..4401)
DNA (1098bp) protein (366aa)
rfaF/gmhB; bifunctional lipopolysaccharide heptosyltransferase II/D, D-heptose 1,7-bisphosphate phosphatase (EC:2.4.-.- 3.1.3.-); K02843 heptosyltransferase II [EC:2.4.-.-] Tax=RIFCSPLOWO2_12_FULL_Aci
Glycosyl transferase family 9 n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SIS8_9BACT
ADP-heptose--LPS heptosyltransferase
13_1_20cm_2_scaffold_3141_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(4507..4677)
DNA (171bp) protein (57aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037B6387
hypothetical protein; K09791 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_20cm_2_scaffold_3141_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

4728..6683
DNA (1956bp) protein (652aa)
Tetratricopeptide repeat protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHP7_KORVE
Flp pilus assembly protein TadD, contains TPR repeats Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein
13_1_20cm_2_scaffold_3141_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

6889..7761
DNA (873bp) protein (291aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_20cm_2_scaffold_3141_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

7823..8698
DNA (876bp) protein (292aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EZL2_9BACT
13_1_20cm_2_scaffold_3141_trna_1
unknown

Not on your lists

8848..8919
DNA (72bp)
transferRNA
13_1_20cm_2_scaffold_3141_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

8956..9921
DNA (966bp) protein (322aa)
ribose-phosphate pyrophosphokinase; K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Phosphoribosylpyrophosphate synthetase n=1 Tax=mine drainage metagenome RepID=E6QNC8_9ZZZZ
13_1_20cm_2_scaffold_3141_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists


9951..10640
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035F6BE4
50S ribosomal protein L25; K02897 large subunit ribosomal protein L25 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
50S ribosomal protein L25
13_1_20cm_2_scaffold_3141_10
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

10855..11274
DNA (420bp) protein (140aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NQ59_9FIRM
13_1_20cm_2_scaffold_3141_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists


11460..11909
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035F2CB1
30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
rpsF; 30S ribosomal protein S6
13_1_20cm_2_scaffold_3141_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


12294..12731
DNA (438bp) protein (146aa)
50S ribosomal protein L9 n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B51FA2
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
rplI; 50S ribosomal protein L9
13_1_20cm_2_scaffold_3141_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

12877..14229
DNA (1353bp) protein (451aa)
primary replicative DNA helicase (EC:3.6.1.-)
Primary replicative DNA helicase n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QUK5_ACEAZ
replicative DNA helicase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_20cm_2_scaffold_3141_14
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

14342..15559
DNA (1218bp) protein (406aa)
alr; alanine racemase; K01775 alanine racemase [EC:5.1.1.1] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Alanine racemase n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A2D4_PELCD
alr; alanine racemase
13_1_20cm_2_scaffold_3141_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

15620..17071
DNA (1452bp) protein (484aa)
DNA repair protein radA n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHB8_CHLTF
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
DNA repair protein RadA
13_1_20cm_2_scaffold_3141_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

17185..18252
DNA (1068bp) protein (356aa)
PilT protein-like protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVA6_KORVE
PilT protein-like Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
twitching motility protein PilT
13_1_20cm_2_scaffold_3141_17
unknown

Not on your lists

18274..18669
DNA (396bp) protein (132aa)

This feature has no annotations

13_1_20cm_2_scaffold_3141_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

18676..19425
DNA (750bp) protein (250aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC:2.3.1.51); K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVH5_KORVE
1-acyl-sn-glycerol-3-phosphate acyltransferase
13_1_20cm_2_scaffold_3141_19
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

19652..20638
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TQQ9_9CHLR
hypothetical protein Tax=RBG_16_Euryarchaeota_68_13_curated
hypothetical protein
13_1_20cm_2_scaffold_3141_20
unknown

Not on your lists

comp(20709..20846)
DNA (138bp) protein (46aa)

This feature has no annotations

13_1_20cm_2_scaffold_3141_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

20907..22181
DNA (1275bp) protein (425aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] Ta
Bifunctional enzyme IspD/IspF n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z573_DESAT
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
13_1_20cm_2_scaffold_3141_22
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

22270..23802
DNA (1533bp) protein (511aa)
gltX2; glutamate--tRNA ligase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein n=2 Tax=unclassified Aminicenantes RepID=UPI000367569C rbh
glutamyl-tRNA synthetase
13_1_20cm_2_scaffold_3141_23
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

23913..24641
DNA (729bp) protein (243aa)
RNA methyltransferase TrmH, group 3; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
rRNA methylase (EC:2.1.1.-)
rRNA methylase, putative, group 3 n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LH92_CHLTF
13_1_20cm_2_scaffold_3141_trna_2
unknown

Not on your lists

24751..24823
DNA (73bp)
transferRNA
13_1_20cm_2_scaffold_3141_trna_3
unknown

Not on your lists

24882..24965
DNA (84bp)
transferRNA
Displaying 26 items

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