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13_1_20cm_2_scaffold_335

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Displaying 29 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_335_1
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(1..522)
DNA (522bp) protein (174aa)
Uncharacterized protein n=3 Tax=Amycolatopsis mediterranei RepID=G0FW72_AMYMS
hypothetical protein Tax=RBG_16_RIF_CHLX_72_14_curated
hypothetical protein
13_1_20cm_2_scaffold_335_2
unknown

Not on your lists

527..841
DNA (315bp) protein (105aa)

This feature has no annotations

13_1_20cm_2_scaffold_335_trna_1
unknown

Not on your lists

878..950
DNA (73bp)
transferRNA
13_1_20cm_2_scaffold_335_3
unknown

Not on your lists

1065..1772
DNA (708bp) protein (236aa)

This feature has no annotations

13_1_20cm_2_scaffold_335_4
Paenibacillus sp. TCA20, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2072..3376)
DNA (1305bp) protein (435aa)
Peptidase M23B n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J920_DESRM
Putative peptidase {ECO:0000313|EMBL:GAK41230.1}; TaxID=1499968 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. TCA20.;"
membrane protein
13_1_20cm_2_scaffold_335_5
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(3373..5313)
DNA (1941bp) protein (647aa)
ABC transporter related protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MEZ2_RHOM4
ABC transporter related protein {ECO:0000313|EMBL:ACY47442.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;
ABC transporter
13_1_20cm_2_scaffold_335_6
Acanthamoeba castellanii, Acanthamoeba, Longamoebia, Eukaryota

Not on your lists

comp(5371..7107)
DNA (1737bp) protein (579aa)
Cellulase (Glycosyl hydrolase family 5) subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff RepID=L8GY69_ACACA
Cellulase (Glycosyl hydrolase family 5) subfamily protein {ECO:0000313|EMBL:ELR17897.1}; TaxID=1257118 species="Eukaryota; Amoebozoa; Discosea; Longamoebia; Centramoebida; Acanthamoebidae; Acanthamoeb
glycosidase
13_1_20cm_2_scaffold_335_7
unknown

Not on your lists

comp(7104..7331)
DNA (228bp) protein (76aa)

This feature has no annotations

13_1_20cm_2_scaffold_335_8
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(7352..7546)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EED2_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CCF83044.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source
13_1_20cm_2_scaffold_335_9
unknown

Not on your lists

comp(7703..8149)
DNA (447bp) protein (149aa)

This feature has no annotations

13_1_20cm_2_scaffold_335_10
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8305..10125
DNA (1821bp) protein (607aa)
hypothetical protein n=1 Tax=Streptomyces sp. FxanaD5 RepID=UPI00037C7A09
Transcriptional regulator, CdaR {ECO:0000313|EMBL:ACV81170.1}; Flags: Precursor;; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella mu
CdaR family transcriptional regulator
13_1_20cm_2_scaffold_335_11
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10365..11810)
DNA (1446bp) protein (482aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=370438 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Pelotomaculum.
Glutamine synthetase n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D3U8_PELTS
GlnA; glutamine synthetase
13_1_20cm_2_scaffold_335_12
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

12087..13595
DNA (1509bp) protein (503aa)
Ammonium transporter n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F545_CONWI
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobac
amt: ammonium transporter
13_1_20cm_2_scaffold_335_13

Not on your lists

13592..13969
DNA (378bp) protein (126aa)
nitrogen regulatory protein P-II n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C36B5
Uncharacterized protein {ECO:0000313|EMBL:KKL07539.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
nitrogen regulatory protein P-II
13_1_20cm_2_scaffold_335_14
Desulfosporosinus sp. I2, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14044..14403)
DNA (360bp) protein (120aa)
thioredoxin n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000375E511
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1617025 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. I2.;"
thioredoxin
13_1_20cm_2_scaffold_335_15
R_RIF_OP11_01_43_15b, RIF-OP11-1, Microgenomates, Bacteria

Not on your lists

14468..16003
DNA (1536bp) protein (512aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AJL5_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OP11_01_43_15b_curated
hypothetical protein
13_1_20cm_2_scaffold_335_16
Paenibacillus larvae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16011..16691)
DNA (681bp) protein (227aa)
menaquinol:cytochrome c oxidoreductase-like protein n=2 Tax=Paenibacillus larvae RepID=UPI0001F85B30
qcrC; menaquinol-cytochrome c reductase cytochrome b/c subunit QcrC
Menaquinol-cytochrome c reductase cytochrome b/c subunit QcrC {ECO:0000313|EMBL:AHD05213.1}; TaxID=697284 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source=
13_1_20cm_2_scaffold_335_17
Paenibacillus sp. JCM 10914, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16691..17386)
DNA (696bp) protein (232aa)
cytochrome B6 n=1 Tax=Paenibacillus fonticola RepID=UPI00035DB1D6
Menaquinone-cytochrome c reductase, cytochrome B subunit {ECO:0000313|EMBL:GAE04690.1}; TaxID=1236974 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Pae
cytochrome b6
13_1_20cm_2_scaffold_335_18
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17396..17932)
DNA (537bp) protein (179aa)
FAD dependent oxidoreductase n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2EZJ5_CLOS4
[Fe-S]-binding protein {ECO:0000313|EMBL:KJK33510.1}; TaxID=68170 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Noca
yhfW; Rieske 2Fe-2S iron-sulfur protein YhfW
13_1_20cm_2_scaffold_335_19
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(17956..18945)
DNA (990bp) protein (330aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=RBG_16_RIF_CHLX_69_14_curated
deb:DehaBAV1_1154 tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] alias=scaffold_5_140,RBG2_C00005G00140 id=1241996 tax=RBG2 species=unknown genus=Dehalococcoides taxon_order=unknown taxon_class=Dehalococcoidetes phylum=Chloroflexi
tryptophanyl-tRNA synthase (EC:6.1.1.2)
13_1_20cm_2_scaffold_335_20
RIFOXYC2_FULL_OD1_Falkowbacteria_48_21_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

19106..20479
DNA (1374bp) protein (458aa)
Membrane protein involved in the export of O-antigen and teichoic acid n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6U8I5_9EURY
polysaccharide biosynthesis protein Tax=RIFOXYC2_FULL_OD1_Falkowbacteria_48_21_curated
polysaccharide biosynthesis protein
13_1_20cm_2_scaffold_335_21
unknown

Not on your lists

comp(20395..21015)
DNA (621bp) protein (207aa)

This feature has no annotations

13_1_20cm_2_scaffold_335_22
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21155..22243)
DNA (1089bp) protein (363aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=351607 species="Bacteria; Actinobacteria; Aci
DNA polymerase IV (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LUV6_ACIC1
13_1_20cm_2_scaffold_335_23
unknown

Not on your lists

comp(22550..22948)
DNA (399bp) protein (133aa)

This feature has no annotations

13_1_20cm_2_scaffold_335_24
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

22995..23741
DNA (747bp) protein (249aa)
rfbA; glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
nucleotidyl transferase Tax=CG_Arma_02
Glucose-1-phosphate thymidylyltransferase alias=gwe2_scaffold_111_93 id=1760956 tax=TA06 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae
13_1_20cm_2_scaffold_335_25
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

23738..24205
DNA (468bp) protein (156aa)
dTDP-4-dehydrorhamnose 3 5-epimerase-like protein; K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] Tax=RBG_16_Chloroflexi_68_14_curated
dTDP-4-dehydrorhamnose 3 5-epimerase-like protein; K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] alias=gwa2_scaffold_29_196 id=5084061 tax=GWA2_OP11 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes organism_desc=RuBisCO project
dTDP-4-dehydrorhamnose 3,5 epimerase
13_1_20cm_2_scaffold_335_26
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

24202..25230
DNA (1029bp) protein (343aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; R
dTDP-glucose 4,6-dehydratase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UTQ0_ROSS1
dTDP-glucose 4,6-dehydratase
13_1_20cm_2_scaffold_335_27
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(25211..25879)
DNA (669bp) protein (223aa)
Glycosyl transferase family 2 n=1 Tax=Mycobacterium rhodesiae JS60 RepID=G4I598_MYCRH
glycosyl transferase family protein Tax=RBG_16_RIF_CHLX_72_14_curated
glycosyl transferase
13_1_20cm_2_scaffold_335_28
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(25942..26268)
DNA (327bp) protein (109aa)
NAD-dependent epimerase n=1 Tax=Catelliglobosispora koreensis RepID=UPI0003781489
NAD-dependent epimerase/dehydratase Tax=RBG_16_RIF_CHLX_70_13_curated
NAD-dependent epimerase/dehydratase
Displaying 29 items

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