ggKbase home page

13_1_20cm_2_scaffold_465

Search features with annotation key words

Displaying 22 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_465_1
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

1..330
DNA (330bp) protein (110aa)
Sigma-70 region 4 type 2 n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XY56_9BACT
ECF subfamily RNA polymerase sigma-24 factor Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
13_1_20cm_2_scaffold_465_trna_1
unknown

Not on your lists

425..496
DNA (72bp)
transferRNA
13_1_20cm_2_scaffold_465_2
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(564..1721)
DNA (1158bp) protein (386aa)
Aminotransferase {ECO:0000313|EMBL:ABF41289.1}; EC=2.6.1.- {ECO:0000313|EMBL:ABF41289.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;"
Aminotransferase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IPB1_KORVE
aminotransferase
13_1_20cm_2_scaffold_465_3
unknown

Not on your lists

comp(2008..2511)
DNA (504bp) protein (168aa)

This feature has no annotations

13_1_20cm_2_scaffold_465_4
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3090..3572
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DK66_SINAD
hypothetical protein Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
hypothetical protein
13_1_20cm_2_scaffold_465_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(3654..6917)
DNA (3264bp) protein (1088aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036B2270
Outer membrane receptor for ferrienterochelin and colicins {ECO:0000313|EMBL:CDM66845.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas
TonB-dependent receptor plug
13_1_20cm_2_scaffold_465_6
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

7243..7827
DNA (585bp) protein (195aa)
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8); K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Hypoxanthine phosphoribosyltransferase n=1 Tax=Roseburia sp. CAG:182 RepID=R7R188_9FIRM
hypoxanthine phosphoribosyltransferase
13_1_20cm_2_scaffold_465_7
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

7931..9703
DNA (1773bp) protein (591aa)
serine phosphatase n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B638CE rbh
Sigma factor sigB regulation protein rsbU, putative {ECO:0000313|EMBL:ACO31994.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidoba
Sigma factor sigB regulation protein rsbU
13_1_20cm_2_scaffold_465_8
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

9700..11112
DNA (1413bp) protein (471aa)
diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
Diaminopimelate decarboxylase n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NT58_GRAMM
diaminopimelate decarboxylase
13_1_20cm_2_scaffold_465_9
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(11123..11983)
DNA (861bp) protein (287aa)
NAD(+) kinase (EC:2.7.1.23); K00858 NAD+ kinase [EC:2.7.1.23] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)(ppnK) (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ51_9BACT
13_1_20cm_2_scaffold_465_10
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(12011..12763)
DNA (753bp) protein (251aa)
hemolysin A; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Hemolysin A n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AN58_PELPD
hemolysin A
13_1_20cm_2_scaffold_465_11
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(12780..13730)
DNA (951bp) protein (317aa)
farnesyl-diphosphate synthase (EC:2.5.1.10); K13789 geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
farnesyl-diphosphate synthase (EC:2.5.1.10)
Farnesyl-diphosphate synthase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02A18_SOLUE
13_1_20cm_2_scaffold_465_12
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(13702..13974)
DNA (273bp) protein (91aa)
exodeoxyribonuclease VII small subunit; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
exodeoxyribonuclease VII small subunit n=1 Tax=Teredinibacter turnerae RepID=UPI000379EE5D
exodeoxyribonuclease VII small subunit
13_1_20cm_2_scaffold_465_13
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14002..14841)
DNA (840bp) protein (280aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_00103}; Short=Fapy-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000255|HAMAP-Rule:MF_00103};; DNA-(apurinic or a
formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase (EC:3.2.2.23 4.2.99.18)
hypothetical protein n=1 Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI00036E9430
13_1_20cm_2_scaffold_465_14
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(14884..15639)
DNA (756bp) protein (252aa)
Peptidase S45 penicillin amidase n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V554_TERSS
Peptidase S45 penicillin amidase {ECO:0000313|EMBL:ADV83741.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain
peptidase S45 penicillin amidase
13_1_20cm_2_scaffold_465_15
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(15671..16399)
DNA (729bp) protein (243aa)
Penicillin amidase {ECO:0000313|EMBL:ABJ85895.1}; EC=3.5.1.11 {ECO:0000313|EMBL:ABJ85895.1};; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus S
penicillin amidase (EC:3.5.1.11)
Penicillin amidase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01WS0_SOLUE
13_1_20cm_2_scaffold_465_16
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(16396..17205)
DNA (810bp) protein (270aa)
Peptidase S45 penicillin amidase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NJS5_ROSCS
Peptidase S45 penicillin amidase {ECO:0000313|EMBL:ABU57745.1}; Flags: Precursor;; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexu
peptidase S45 penicillin amidase
13_1_20cm_2_scaffold_465_17
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

17279..18820
DNA (1542bp) protein (514aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKR7_KORVE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
hypothetical protein
13_1_20cm_2_scaffold_465_18
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

18828..19748
DNA (921bp) protein (307aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8P156_GRAMM
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:AEU36980.1}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;"
binding-protein-dependent transport system inner membrane protein
13_1_20cm_2_scaffold_465_19
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

19745..20620
DNA (876bp) protein (292aa)
ABC peptide transporter, inner membrane subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRV3_KORVE
ABC peptide transporter, inner membrane subunit {ECO:0000313|EMBL:ABF40397.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Kori
peptide ABC transporter inner membrane protein
13_1_20cm_2_scaffold_465_20
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(20632..21423)
DNA (792bp) protein (264aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKS0_KORVE
hypothetical protein; K09134 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
hypothetical protein
13_1_20cm_2_scaffold_465_21
unknown

Not on your lists

22055..22501
DNA (447bp) protein (149aa)

This feature has no annotations

Displaying 22 items

View Taxonomy