ggKbase home page

13_1_20cm_2_scaffold_1002

Search features with annotation key words

Displaying items 1-30 of 31 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_1002_1
unknown

Not on your lists

comp(35..436)
DNA (402bp) protein (134aa)

This feature has no annotations

13_1_20cm_2_scaffold_1002_2
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

513..1916
DNA (1404bp) protein (468aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579, ECO:0000313|EMBL:CBK43783.1}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579, ECO:0000313|EMBL:CBK43783.1};; TaxID=330214 species="Bacteria; Nitrosp
hom; homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8F1_9BACT
13_1_20cm_2_scaffold_1002_3
unknown

Not on your lists

comp(3325..3486)
DNA (162bp) protein (54aa)

This feature has no annotations

13_1_20cm_2_scaffold_1002_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

3653..5038
DNA (1386bp) protein (462aa)
dihydropyrimidinase (EC:3.5.2.2); K01464 dihydropyrimidinase [EC:3.5.2.2] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hydA; dihydropyrimidinase (EC:3.5.2.2)
hypothetical protein n=1 Tax=SAR406 cluster bacterium SCGC AB-629-J13 RepID=UPI0003607E9E
13_1_20cm_2_scaffold_1002_5
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

5090..5959
DNA (870bp) protein (290aa)
beta-alanine synthase (EC:3.5.1.6); K12251 N-carbamoylputrescine amidase [EC:3.5.1.53] Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00036C1105
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
13_1_20cm_2_scaffold_1002_6
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

5985..7025
DNA (1041bp) protein (347aa)
methylenetetrahydromethanopterin reductase; K00320 coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterin reductase [EC:1.5.99.11] Tax=GWC2_RIF_CHLX_73_18_curated
methylenetetrahydromethanopterin reductase (EC:1.5.99.11)
5,10-methylenetetrahydromethanopterin reductase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TBN9_9CHLR rbh
13_1_20cm_2_scaffold_1002_7
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7123..7332
DNA (210bp) protein (70aa)
Sec-independent protein translocase protein TatA n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1N319_9CLOT
Sec-independent protein translocase protein TatA/E-like protein; K03116 sec-independent protein translocase protein TatA Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
tatA; twin-arginine translocation protein TatA
13_1_20cm_2_scaffold_1002_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(7407..8942)
DNA (1536bp) protein (512aa)
threonine dehydratase, biosynthetic; K01754 threonine dehydratase [EC:4.3.1.19] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ilvA; threonine ammonia-lyase, biosynthetic (EC:4.3.1.19)
Threonine dehydratase, biosynthetic n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EP29_ACIF5
13_1_20cm_2_scaffold_1002_9
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(9101..11221)
DNA (2121bp) protein (707aa)
carbon monoxide dehydrogenase large subunit n=1 Tax=Herbaspirillum lusitanum RepID=UPI000361F44B
aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL-like protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL-like protein
13_1_20cm_2_scaffold_1002_10
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(11231..11692)
DNA (462bp) protein (154aa)
(2Fe-2S)-binding protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI0002EBD93E
putative isoquinoline 1-oxidoreductase, subunit alpha Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
2Fe-2S iron-sulfur cluster binding domain-containing protein
13_1_20cm_2_scaffold_1002_11
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(11947..12639)
DNA (693bp) protein (231aa)
Pirin domain protein n=1 Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9U1G3_9CYAN
Quercetin 2,3-dioxygenase {ECO:0000313|EMBL:KIF18712.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
Pirin domain-containing protein
13_1_20cm_2_scaffold_1002_12
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(12691..13593)
DNA (903bp) protein (301aa)
UPI00039EE8CF related cluster n=1 Tax=unknown RepID=UPI00039EE8CF
beta-lactamase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
beta-lactamase domain-containing protein
13_1_20cm_2_scaffold_1002_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

13757..14800
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000379A107
Mg-chelatase subunit ChlD {ECO:0000313|EMBL:CDM66482.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
von Willebrand factor type A domain-containing protein
13_1_20cm_2_scaffold_1002_14
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14756..15382)
DNA (627bp) protein (209aa)
Lysine exporter protein (LYSE/YGGA) n=1 Tax=alpha proteobacterium BAL199 RepID=A8U1R1_9PROT
Lysine exporter protein (LYSE/YGGA) {ECO:0000313|EMBL:EDP61796.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
Putative threonine efflux protein
13_1_20cm_2_scaffold_1002_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

15611..16996
DNA (1386bp) protein (462aa)
aminomethyltransferase (EC:2.1.2.10)
Aminomethyltransferase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVQ1_RUBXD rbh
aminomethyltransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_20cm_2_scaffold_1002_16
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17045..18271)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SFS4_METPP
Uncharacterized protein {ECO:0000313|EMBL:ETX02434.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein
13_1_20cm_2_scaffold_1002_17
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18285..20114)
DNA (1830bp) protein (610aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SFS3_METPP rbh
Uncharacterized protein {ECO:0000313|EMBL:ETX02433.1}; Flags: Fragment;; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheone
hypothetical protein
13_1_20cm_2_scaffold_1002_18
unknown

Not on your lists

20263..20871
DNA (609bp) protein (203aa)

This feature has no annotations

13_1_20cm_2_scaffold_1002_19
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20881..22707
DNA (1827bp) protein (609aa)
nucleotide pyrophosphatase n=1 Tax=Afipia birgiae RepID=UPI00038253A0 rbh
Uncharacterized protein {ECO:0000313|EMBL:CCD85211.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
signal peptide
13_1_20cm_2_scaffold_1002_20
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22752..24059)
DNA (1308bp) protein (436aa)
Peptidase M24 n=1 Tax=Psychromonas ingrahamii (strain 37) RepID=A1SYC6_PSYIN
peptidase M24 Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
peptidase M24
13_1_20cm_2_scaffold_1002_21
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24069..25244)
DNA (1176bp) protein (392aa)
pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=RBG_16_Betaproteobac
Dihydrolipoyllysine-residue acetyltransferase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TBK6_9CHLR
2-oxoacid dehydrogenases acyltransferase family protein
13_1_20cm_2_scaffold_1002_22
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25245..26231)
DNA (987bp) protein (329aa)
pyruvate dehydrogenase E1 component beta subunit; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Tax=RBG_16_Betaproteobacteria_66_20_curated
phl:KKY_3645 pyruvate dehydrogenase E1 component beta subunit; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] alias=RBG9_39_42,RBG9_C00039G00042 id=1245703 tax=RBG9 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi
pyruvate dehydrogenase E1 component beta subunit
13_1_20cm_2_scaffold_1002_23
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26224..27222)
DNA (999bp) protein (333aa)
pyruvate dehydrogenase E1 component alpha subunit; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
Pyruvate dehydrogenase (Acetyl-transferring) n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TBK9_9CHLR
pyruvate dehydrogenase E1 component alpha subunit
13_1_20cm_2_scaffold_1002_24
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(27219..28100)
DNA (882bp) protein (294aa)
2-hydroxy-3-oxopropionate reductase; K00042 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
UniRef90_D6TBL0 2-hydroxy-3-oxopropionate reductase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TBL0_9CHLR alias=RBG9_39_40,RBG9_C00039G00040 id=1245701 tax=RBG9 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi
13_1_20cm_2_scaffold_1002_25
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(28101..29465)
DNA (1365bp) protein (455aa)
Succinate-semialdehyde dehydrogenase (NAD(P)+) {ECO:0000313|EMBL:ABF39382.1}; EC=1.2.1.16 {ECO:0000313|EMBL:ABF39382.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteria
Succinate-semialdehyde dehydrogenase (NAD(P)+) n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IUR8_KORVE rbh
succinate-semialdehyde dehydrogenase (NAD(P)+)
13_1_20cm_2_scaffold_1002_26
Fonsecaea multimorphosa, Fonsecaea, Chaetothyriales, Chaetothyriomycetidae, Ascomycota, Fungi

Not on your lists

29564..30997
DNA (1434bp) protein (478aa)
Putative kinesin n=2 Tax=Leishmania donovani species complex RepID=A4HX43_LEIIN
Uncharacterized protein {ECO:0000313|EMBL:KIX99435.1}; TaxID=1442371 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Chaetothyriomycetidae; Chaetothyriales; Herpotrichi
hypothetical protein
13_1_20cm_2_scaffold_1002_27
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

31129..32040
DNA (912bp) protein (304aa)
Glucose dehydrogenase, Gcd and cytochrome c-like domain n=1 Tax=Deinococcus geothermalis (strain DSM 11300) RepID=Q1IZ88_DEIGD
cytochrome c Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Pyrrolo-quinoline quinone
13_1_20cm_2_scaffold_1002_28
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

32057..32458
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI00036DD31A
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_20cm_2_scaffold_1002_29
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32535..33419
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Nodosilinea nodulosa RepID=UPI00037BBA6B
6-phosphogluconate dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
NAD-binding 6-phosphogluconate dehydrogenase
13_1_20cm_2_scaffold_1002_30
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33447..34643
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI000381E5FF
Sugar phosphate isomerase family enzyme Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
sugar phosphate isomerase
Displaying items 1-30 of 31 in total

View Taxonomy