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13_1_20cm_2_scaffold_1232

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Displaying 19 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_1232_1
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(2..589)
DNA (588bp) protein (196aa)
Type I phosphodiesterase/nucleotide pyrophosphatase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01TB3_SOLUE
type I phosphodiesterase/nucleotide pyrophosphatase Tax=RBG_13_OP8X_37_8_curated
type I phosphodiesterase/nucleotide pyrophosphatase
13_1_20cm_2_scaffold_1232_2
RLO_PLX_64_10, Bacteria

Not on your lists

772..1965
DNA (1194bp) protein (398aa)
anmK; anhydro-N-acetylmuramic acid kinase; K09001 anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CH27_THET1
hypothetical protein
13_1_20cm_2_scaffold_1232_3

Not on your lists

comp(1975..2319)
DNA (345bp) protein (115aa)
Sua5/YciO/YrdC/YwlC family protein (Fragment) n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YWU4_9RHOO
Marine sediment metagenome DNA, contig: S01H1_S34844 {ECO:0000313|EMBL:GAG34948.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
translation factor SUA5
13_1_20cm_2_scaffold_1232_4
Pyramidobacter piscolens, Pyramidobacter, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(2325..2558)
DNA (234bp) protein (78aa)
Putative Sua5/YciO/YrdC/YwlC family protein (Fragment) n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y6J0_9BACT
Putative Sua5/YciO/YrdC/YwlC family protein {ECO:0000313|EMBL:EFB90033.1}; Flags: Fragment;; TaxID=352165 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Pyramidobacter.;
translation factor
13_1_20cm_2_scaffold_1232_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

2651..3490
DNA (840bp) protein (280aa)
rRNA methyltransferase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67QG1_SYMTH
tRNA/rRNA methyltransferase SpoU; K03437 RNA methyltransferase, TrmH family Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
rRNA methyltransferase
13_1_20cm_2_scaffold_1232_6
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

comp(3537..5759)
DNA (2223bp) protein (741aa)
PAS domain S-box n=1 Tax=Acidovorax sp. CF316 RepID=J0KK64_9BURK
PAS/PAC sensor hybrid histidine kinase Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
two-component sensor histidine kinase
13_1_20cm_2_scaffold_1232_7
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(5818..7167)
DNA (1350bp) protein (450aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8VYA6_DESAS
diguanylate cyclase/phosphodiesterase
Tax=BJP_IG2102_Coriobacteriales_64_17
13_1_20cm_2_scaffold_1232_8
MPI_TA06_32_111, Bacteria

Not on your lists

comp(7164..7553)
DNA (390bp) protein (130aa)
ArsR family transcriptional regulator n=1 Tax=Desulfobacter curvatus RepID=UPI00037C8E11
Response regulator Tax=MPI_TA06_32_111
putative response regulator (CheY-like)
13_1_20cm_2_scaffold_1232_9
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7571..8407)
DNA (837bp) protein (279aa)
Response regulator receiver modulated PilZ sensor protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBB4_GEOUR
response regulator Tax=GWD2_Desulfuromonadales_61_12_curated
response regulator receiver modulated PilZ sensor protein
13_1_20cm_2_scaffold_1232_10
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

Not on your lists

comp(8465..9925)
DNA (1461bp) protein (487aa)
Sigma-54-dependent transcriptional response regulator n=2 Tax=Geobacter sulfurreducens RepID=D7AHR2_GEOSK rbh
Fis family transcriptional regulator Tax=RBG_13_RIF03_48_7_curated
sigma-54-dependent transcriptional response regulator
13_1_20cm_2_scaffold_1232_11
R_OD1_Uhrbacteria_47_25, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(10160..10585)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UIS9_MYXSD
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Uhrbacteria_47_25_curated
hypothetical protein
13_1_20cm_2_scaffold_1232_trna_1
unknown

Not on your lists

comp(10635..10707)
DNA (73bp)
transferRNA
13_1_20cm_2_scaffold_1232_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(10759..11868)
DNA (1110bp) protein (370aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinom
tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDQ3_CHLTF
13_1_20cm_2_scaffold_1232_13
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(11865..12401)
DNA (537bp) protein (179aa)
Fis family transcriptional regulator n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U284_MYXSD
FHA domain-containing protein Tax=RBG_13_OP8X_37_8_curated
Fis family transcriptional regulator
13_1_20cm_2_scaffold_1232_14
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12398..13567)
DNA (1170bp) protein (390aa)
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase family protein n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PLM1_9FIRM
Cysteine desulfurase family protein {ECO:0000313|EMBL:EKP93772.1}; TaxID=867903 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;"
13_1_20cm_2_scaffold_1232_15
CG_Syntroph_02, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13687..15729
DNA (2043bp) protein (681aa)
ileS; isoleucyl-tRNA synthetase; K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] Tax=CG_Syntroph_02
Isoleucine--tRNA ligase n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LEH3_SYNFM
ileS; isoleucyl-tRNA synthetase
13_1_20cm_2_scaffold_1232_16
CSP1_5_NC10, NC10, Bacteria

Not on your lists


15735..16463
DNA (729bp) protein (243aa)
ileS; isoleucine tRNA synthetase (EC:6.1.1.5) Tax=CSP1_5_NC10
ileS; isoleucine tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN67_9BACT
13_1_20cm_2_scaffold_1232_17
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16460..16975
DNA (516bp) protein (172aa)
lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36] Tax=RBG_16_Deltaproteobacteria_58_17_curated
Lipoprotein signal peptidase n=1 Tax=Flexistipes sinusarabici (strain DSM 4947 / MAS 10) RepID=F8E4H7_FLESM
lipoprotein signal peptidase
13_1_20cm_2_scaffold_1232_18
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

16977..17729
DNA (753bp) protein (251aa)
prolipoprotein diacylglyceryl transferase; K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-] Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
Prolipoprotein diacylglyceryl transferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VL5_SOLUE
prolipoprotein diacylglyceryl transferase
Displaying 19 items

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