ggKbase home page

13_1_20cm_2_scaffold_3105

Search features with annotation key words

Displaying 18 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_3105_1
unknown

Not on your lists

comp(3..89)
DNA (87bp) protein (29aa)

This feature has no annotations

13_1_20cm_2_scaffold_3105_2
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(86..505)
DNA (420bp) protein (140aa)
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:BAH38336.1}; EC=5.3.1.6 {ECO:0000313|EMBL:BAH38336.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatim
rpiB; ribose-5-phosphate isomerase B (EC:5.3.1.6)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z1U8_9BACT
13_1_20cm_2_scaffold_3105_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(516..1661)
DNA (1146bp) protein (382aa)
leucine dehydrogenase (EC:1.4.1.9); K00263 leucine dehydrogenase [EC:1.4.1.9] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Leucine dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7X5_GEMAT
Glu/Leu/Phe/Val dehydrogenase
13_1_20cm_2_scaffold_3105_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(1603..2775)
DNA (1173bp) protein (391aa)
acyl-CoA dehydrogenase (EC:1.3.99.-) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
acyl-CoA dehydrogenase (EC:1.3.99.-)
Acyl-CoA dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7X4_GEMAT
13_1_20cm_2_scaffold_3105_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2759..3607)
DNA (849bp) protein (283aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=GWC2_Gemmatimonadetes_71_10_curated
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MG94_RHOM4
3-hydroxybutyryl-CoA dehydrogenase
13_1_20cm_2_scaffold_3105_6
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(3604..4470)
DNA (867bp) protein (289aa)
Abortive infection protein n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V6K5_TERSS
Abortive infection protein {ECO:0000313|EMBL:ADV82744.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC
abortive infection protein
13_1_20cm_2_scaffold_3105_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(4467..5036)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZF11_TERRK
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_2_scaffold_3105_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(5033..6226)
DNA (1194bp) protein (398aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Acetyl-CoA acetyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7X1_GEMAT rbh
acetyl-CoA acetyltransferase
13_1_20cm_2_scaffold_3105_9
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(6296..8179)
DNA (1884bp) protein (628aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Threonine--tRNA ligase n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8AAU1_THEID
threonyl-tRNA synthetase
13_1_20cm_2_scaffold_3105_10
unknown

Not on your lists

comp(8184..8363)
DNA (180bp) protein (60aa)

This feature has no annotations

13_1_20cm_2_scaffold_3105_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists


8432..10984
DNA (2553bp) protein (851aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
valS; valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7W5_GEMAT
13_1_20cm_2_scaffold_3105_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

11018..12343
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7W4_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_2_scaffold_3105_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

12340..13635
DNA (1296bp) protein (432aa)
selenocysteine synthase (EC:2.9.1.1); K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
L-seryl-tRNA(Sec) selenium transferase n=1 Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AG80_GEOSK
selA; L-seryl-tRNA(Sec) selenium transferase
13_1_20cm_2_scaffold_3105_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

13628..14188
DNA (561bp) protein (187aa)
D,D-heptose 1,7-bisphosphate phosphatase {ECO:0000256|PIRNR:PIRNR004682}; EC=3.1.3.- {ECO:0000256|PIRNR:PIRNR004682};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bact
D,D-heptose 1,7-bisphosphate phosphatase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B6I7_HERA2
histidinol-phosphate phosphatase family protein
13_1_20cm_2_scaffold_3105_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

14382..15047
DNA (666bp) protein (222aa)
hypothetical protein, partial n=1 Tax=Nodosilinea nodulosa RepID=UPI00035DE898
peptidase domain-containing protein Tax=GWC2_Gemmatimonadetes_71_10_curated
peptidase-like protein
13_1_20cm_2_scaffold_3105_16
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15044..16417
DNA (1374bp) protein (458aa)
Peptidase C14 caspase catalytic subunit p20 n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QGQ3_BRESC
Peptidase C14 caspase catalytic subunit p20 {ECO:0000313|EMBL:ADL00869.1}; Flags: Precursor;; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Br
peptidase C14 caspase catalytic subunit p20
13_1_20cm_2_scaffold_3105_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

16414..17031
DNA (618bp) protein (206aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_019
Phosphoribosylglycinamide formyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7W2_GEMAT
phosphoribosylglycinamide formyltransferase
13_1_20cm_2_scaffold_3105_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

17021..17950
DNA (930bp) protein (310aa)
Peptidase family protein n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZEB7_TERRK
Putative M42 glutamyl aminopeptidase Tax=GWC2_Gemmatimonadetes_71_10_curated
peptidase family protein
Displaying 18 items

View Taxonomy