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13_1_20cm_2_scaffold_1464

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_1464_1
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

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3..701
DNA (699bp) protein (233aa)
rpe; d-ribulose-5-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
rpe; d-ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAB5_9BACT rbh
13_1_20cm_2_scaffold_1464_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


708..2282
DNA (1575bp) protein (525aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAB6_9BACT rbh
13_1_20cm_2_scaffold_1464_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


2360..4075
DNA (1716bp) protein (572aa)
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanyl-tRNA synthetase, beta subunit n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAB7_9BACT rbh
13_1_20cm_2_scaffold_1464_4
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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comp(4153..4515)
DNA (363bp) protein (121aa)
50S ribosomal protein L20 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAB8_9BACT
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus
rplT; 50S ribosomal protein L20
13_1_20cm_2_scaffold_1464_5
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists


comp(4599..4802)
DNA (204bp) protein (68aa)
50S ribosomal protein L35 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAB9_9BACT
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
rpmI; 50S ribosomal protein L35
13_1_20cm_2_scaffold_1464_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(4835..5251)
DNA (417bp) protein (139aa)
Translation initiation factor IF-3 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAC0_9BACT
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
infC; translation initiation factor IF-3
13_1_20cm_2_scaffold_1464_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(5365..7248)
DNA (1884bp) protein (628aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAC1_9BACT
13_1_20cm_2_scaffold_1464_trna_1
unknown

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comp(7733..7804)
DNA (72bp)
transferRNA
13_1_20cm_2_scaffold_1464_8
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(7942..8214)
DNA (273bp) protein (91aa)
Transcriptional dual regulator HU-alpha n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAC2_9BACT
hupA; transcriptional dual regulator HU-alpha; K03530 DNA-binding protein HU-beta Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
hupA; transcriptional dual regulator HU-alpha
13_1_20cm_2_scaffold_1464_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(8362..8988)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAC3_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_20cm_2_scaffold_1464_10
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

9490..9942
DNA (453bp) protein (151aa)
Putative HTH-type transcriptional regulator, rrf2 family n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAC4_9BACT
putative HTH-type transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative HTH-type transcriptional regulator
13_1_20cm_2_scaffold_1464_11
unknown

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10051..10185
DNA (135bp) protein (45aa)

This feature has no annotations

Displaying 12 items

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