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13_1_20cm_2_scaffold_336

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_336_1
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

3..881
DNA (879bp) protein (293aa)
dat; d-amino-acid transaminase (EC:2.6.1.21); K00824 D-alanine transaminase [EC:2.6.1.21] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
dat; d-amino-acid transaminase (EC:2.6.1.21)
D-amino-acid transaminase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8H2_9BACT
13_1_20cm_2_scaffold_336_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

1019..1546
DNA (528bp) protein (176aa)
Ribosome maturation factor RimP n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8H1_9BACT
yhbC; hypothetical protein; K09748 ribosome maturation factor RimP Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
yhbC; hypothetical protein
13_1_20cm_2_scaffold_336_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

1590..2780
DNA (1191bp) protein (397aa)
Transcription termination factor NusA n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8H0_9BACT rbh
nusA; transcription termination factor NusA; K02600 N utilization substance protein A Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
nusA; transcription termination factor NusA
13_1_20cm_2_scaffold_336_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

2823..5498
DNA (2676bp) protein (892aa)
Translation initiation factor IF-2 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8G9_9BACT
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
infB; translation initiation factor IF-2
13_1_20cm_2_scaffold_336_5
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

5606..5887
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8G8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CBK43800.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
hypothetical protein
13_1_20cm_2_scaffold_336_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

5953..6339
DNA (387bp) protein (129aa)
Ribosome-binding factor A n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8G7_9BACT
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rbfA; ribosome-binding factor A
13_1_20cm_2_scaffold_336_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

6362..7363
DNA (1002bp) protein (334aa)
truB; tRNA pseudouridine synthase B (EC:5.4.99.-); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
truB; tRNA pseudouridine synthase B (EC:5.4.99.-)
tRNA pseudouridine synthase B n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8G6_9BACT rbh
13_1_20cm_2_scaffold_336_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


7406..7675
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8G5_9BACT
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpsO; 30S ribosomal protein S15
13_1_20cm_2_scaffold_336_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

7954..10083
DNA (2130bp) protein (710aa)
pnp; polyribonucleotide nucleotidyltransferase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
pnp; polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8G3_9BACT rbh
13_1_20cm_2_scaffold_336_10
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

10092..11345
DNA (1254bp) protein (418aa)
Putative Zn-dependent peptidase, M16 family {ECO:0000313|EMBL:CBK43794.1}; EC=3.4.24.- {ECO:0000313|EMBL:CBK43794.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitro
putative M16 family Zn-dependent peptidase (EC:3.4.24.-)
Putative Zn-dependent peptidase, M16 family n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8G2_9BACT rbh
13_1_20cm_2_scaffold_336_11
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

11600..12091
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8G0_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_20cm_2_scaffold_336_12
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

12169..12837
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8F9_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:CBK43791.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
hypothetical protein
13_1_20cm_2_scaffold_336_13
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(12895..15585)
DNA (2691bp) protein (897aa)
DNA mismatch repair protein MutS n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8F8_9BACT rbh
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
mutS; DNA mismatch repair protein MutS
13_1_20cm_2_scaffold_336_14
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(15578..15934)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8F7_9BACT
hypothetical protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
hypothetical protein
13_1_20cm_2_scaffold_336_15
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(15931..16524)
DNA (594bp) protein (198aa)
HIT family hydrolase n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZL97_THELI
HIT family hydrolase Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase
13_1_20cm_2_scaffold_336_16
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(16521..17120)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8F6_9BACT
yjeE; hypothetical protein; K06925 UPF0079 ATP-binding protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
yjeE; hypothetical protein
13_1_20cm_2_scaffold_336_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(17092..18645)
DNA (1554bp) protein (518aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8F5_9BACT rbh
yjeF; hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
yjeF; hypothetical protein
13_1_20cm_2_scaffold_336_18
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(18750..19133)
DNA (384bp) protein (128aa)
holo-(acyl-carrier-protein) synthase; K00997 holo-[acyl-carrier protein] synthase [EC:2.7.8.7] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Holo-[acyl-carrier-protein] synthase n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D4H7_PELTS
AcpS; phosphopantetheinyl transferase
13_1_20cm_2_scaffold_336_19
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(19220..19933)
DNA (714bp) protein (238aa)
pdxJ; pyridoxine 5'-phosphate synthase (EC:2.6.99.2); K03474 pyridoxine 5-phosphate synthase [EC:2.6.99.2] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
pdxJ; pyridoxine 5'-phosphate synthase (EC:2.6.99.2)
Pyridoxine 5'-phosphate synthase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8F4_9BACT rbh
13_1_20cm_2_scaffold_336_20
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

20244..21434
DNA (1191bp) protein (397aa)
yfdZ; pLp-dependent aminotransferase (EC:2.6.1.-); K14261 alanine-synthesizing transaminase [EC:2.6.1.-] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
yfdZ; pLp-dependent aminotransferase (EC:2.6.1.-)
PLP-dependent aminotransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8F2_9BACT
13_1_20cm_2_scaffold_336_21
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

21431..22744
DNA (1314bp) protein (438aa)
hom; homoserine dehydrogenase (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hom; homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8F1_9BACT rbh
13_1_20cm_2_scaffold_336_22
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

22795..23853
DNA (1059bp) protein (353aa)
thrC2; threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
thrC2; threonine synthase (EC:4.2.3.1)
Threonine synthase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8F0_9BACT rbh
13_1_20cm_2_scaffold_336_23
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

23870..25126
DNA (1257bp) protein (419aa)
apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1); K15635 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_1
apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8E9_9BACT rbh
13_1_20cm_2_scaffold_336_24
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

26283..27743
DNA (1461bp) protein (487aa)
2-isopropylmalate synthase (EC:2.3.3.-); K01649 2-isopropylmalate synthase [EC:2.3.3.13] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
2-isopropylmalate synthase (EC:2.3.3.-)
2-isopropylmalate/homocitrate synthase-family transferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8E7_9BACT rbh
13_1_20cm_2_scaffold_336_25
unknown

Not on your lists

comp(27685..27834)
DNA (150bp) protein (50aa)

This feature has no annotations

13_1_20cm_2_scaffold_336_26
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

27987..28259
DNA (273bp) protein (91aa)
Integration host factor, alpha subunit n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8E6_9BACT
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
ihfA; integration host factor subunit alpha
13_1_20cm_2_scaffold_336_27
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

28314..28664
DNA (351bp) protein (117aa)
Transcriptional regulator, MerR family n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8E5_9BACT
MerR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
MerR family transcriptional regulator
13_1_20cm_2_scaffold_336_trna_1
unknown

Not on your lists

28744..28817
DNA (74bp)
transferRNA
Displaying 28 items

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