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13_1_20cm_2_scaffold_1800

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_1800_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(16..237)
DNA (222bp) protein (74aa)
id=3767291 Tax=GWC2_Rokubacteria_70_16_curated
13_1_20cm_2_scaffold_1800_2
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(266..772)
DNA (507bp) protein (169aa)
translation inhibitor endoribonuclease; K07567 TdcF protein Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
endoribonuclease; K07567 TdcF protein alias=RBG9_59_5,RBG9_C00059G00005 id=1246927 tax=RBG9 species=Bordetella avium genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria
13_1_20cm_2_scaffold_1800_3
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(790..1536)
DNA (747bp) protein (249aa)
3-oxoacyl-ACP synthase n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B51EF5
Uncharacterized protein {ECO:0000313|EMBL:ETW98717.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
3-oxoacyl-ACP reductase
13_1_20cm_2_scaffold_1800_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1553..2488)
DNA (936bp) protein (312aa)
carbamate kinase (EC:2.7.2.2); K00926 carbamate kinase [EC:2.7.2.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
carbamate kinase (EC:2.7.2.2)
Carbamate kinase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RH43_MOOTA
13_1_20cm_2_scaffold_1800_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2485..3561)
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000371E1C3
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_20cm_2_scaffold_1800_6
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

3873..4508
DNA (636bp) protein (212aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAH3_ANADF
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
hypothetical protein
13_1_20cm_2_scaffold_1800_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

4508..5506
DNA (999bp) protein (333aa)
hypothetical protein; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01WD4_SOLUE
hypothetical protein
13_1_20cm_2_scaffold_1800_8
unknown

Not on your lists

5769..5987
DNA (219bp) protein (73aa)

This feature has no annotations

13_1_20cm_2_scaffold_1800_9
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5991..6281
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037817BF
Uncharacterized protein {ECO:0000313|EMBL:ETW97051.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
13_1_20cm_2_scaffold_1800_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6307..7800)
DNA (1494bp) protein (498aa)
hypothetical protein n=1 Tax=Spirochaeta alkalica RepID=UPI00035E1291 rbh
protein FdrA; K02381 FdrA protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
protein fdrA
13_1_20cm_2_scaffold_1800_11
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(7809..8165)
DNA (357bp) protein (119aa)
Histidine kinase (EC:2.7.13.3) Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Rhodovulum sp. PH10 RepID=J6J317_9RHOB
two component system response regulator
13_1_20cm_2_scaffold_1800_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8162..9454)
DNA (1293bp) protein (431aa)
Sigma-54-dependent transcriptional response regulator n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A223_PELCD
two component, sigma54 specific, Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_
Fis family transcriptional regulator
13_1_20cm_2_scaffold_1800_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9458..11683)
DNA (2226bp) protein (742aa)
Sensor histidine kinase, HAMP and PAS domain-containing n=2 Tax=Geobacter sulfurreducens RepID=D7AGS7_GEOSK
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
sensor histidine kinase, HAMP and PAS domain-containing
13_1_20cm_2_scaffold_1800_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11703..12263)
DNA (561bp) protein (187aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_20cm_2_scaffold_1800_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12352..13251)
DNA (900bp) protein (300aa)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] Tax=GWA2_Rokubacteria_73_35_curated
lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase (EC:3.5.1.-)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKY4_9BACT
13_1_20cm_2_scaffold_1800_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(13406..13831)
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_ANIW137I15 RepID=B3T4N4_9ZZZZ
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein
13_1_20cm_2_scaffold_1800_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13824..14501)
DNA (678bp) protein (226aa)
16S ribosomal RNA methyltransferase RsmE; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ribosomal RNA small subunit methyltransferase E n=7 Tax=Clostridium thermocellum RepID=A3DF22_CLOTH
hypothetical protein
13_1_20cm_2_scaffold_1800_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14579..15460)
DNA (882bp) protein (294aa)
prmA; 50S ribosomal protein L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-] Tax=GWA2_Rokubacteria_73_35_curated
Ribosomal protein L11 methyltransferase n=2 Tax=Geobacter sulfurreducens RepID=PRMA_GEOSL
prmA; 50S ribosomal protein L11 methyltransferase
13_1_20cm_2_scaffold_1800_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15460..16554)
DNA (1095bp) protein (365aa)
Chaperone protein DnaJ n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MI11_9BACT
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK
13_1_20cm_2_scaffold_1800_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16557..17075)
DNA (519bp) protein (173aa)
molecular chaperone GrpE n=1 Tax=Paenibacillus elgii RepID=UPI000248DF1F
GrpE protein HSP-70 cofactor; K03687 molecular chaperone GrpE Tax=GWA2_Rokubacteria_73_35_curated
molecular chaperone GrpE
13_1_20cm_2_scaffold_1800_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17072..18088)
DNA (1017bp) protein (339aa)
Heat-inducible transcription repressor HrcA n=2 Tax=Geobacter sulfurreducens RepID=HRCA_GEOSL
heat-inducible transcriptional repressor; K03705 heat-inducible transcriptional repressor Tax=GWA2_Rokubacteria_73_35_curated
hrcA; heat-inducible transcription repressor HrcA
13_1_20cm_2_scaffold_1800_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18150..18680)
DNA (531bp) protein (177aa)
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7G5_SPHTD
coproporphyrinogen III oxidase
Displaying 22 items

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