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13_1_20cm_2_scaffold_2206

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_2206_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1..954)
DNA (954bp) protein (318aa)
galactose-1-phosphate uridylyltransferase; K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
galactose-1-phosphate uridylyltransferase n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI000371DAA1
galactose-1-phosphate uridylyltransferase
13_1_20cm_2_scaffold_2206_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(963..2315)
DNA (1353bp) protein (451aa)
TPR repeat-containing protein n=1 Tax=Cyanothece sp. (strain PCC 8801) RepID=B7K3M3_CYAP8
peptidase S1 and S6 chymotrypsin/Hap; K12600 superkiller protein 3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein
13_1_20cm_2_scaffold_2206_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2308..6693)
DNA (4386bp) protein (1462aa)
Conserved putative chloride channel n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AW90_SYNWW
chloride channel Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
chloride channel
13_1_20cm_2_scaffold_2206_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(6690..7580)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003053148
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein
13_1_20cm_2_scaffold_2206_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7584..9029)
DNA (1446bp) protein (482aa)
id=3287913 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_2_scaffold_2206_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9026..10039)
DNA (1014bp) protein (338aa)
MoxR-like ATPases (EC:3.6.3.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
MoxR-like ATPases (EC:3.6.3.-)
MoxR-like ATPases n=1 Tax=Chthonomonas calidirosea T49 RepID=S0ETU8_9BACT
13_1_20cm_2_scaffold_2206_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10322..11308)
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI0003727294
Glycosyl transferase, group 1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase, group 1
13_1_20cm_2_scaffold_2206_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11395..11682
DNA (288bp) protein (96aa)
Conserved uncharacterized protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08V59_STIAD
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_20cm_2_scaffold_2206_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11699..12082
DNA (384bp) protein (128aa)
Putative Thioredoxin (H-type,TRX-H) n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EH44_BRASB
Thiol-disulfide isomerase {ECO:0000313|EMBL:EYR77593.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
thioredoxin (H-type,TRX-H)
13_1_20cm_2_scaffold_2206_10
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12087..12794
DNA (708bp) protein (236aa)
Cytochrome c biogenesis protein transmembrane region n=1 Tax=Afipia sp. 1NLS2 RepID=D6V471_9BRAD
cytochrome c biogenesis protein transmembrane region
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
13_1_20cm_2_scaffold_2206_11
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12864..13961)
DNA (1098bp) protein (366aa)
Conserved hypothetical secreted protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K1L6_AZOSB
Conserved hypothetical secreted protein {ECO:0000313|EMBL:CAL92721.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp
hypothetical protein
13_1_20cm_2_scaffold_2206_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14073..15071)
DNA (999bp) protein (333aa)
selenide, water dikinase; K01008 selenide, water dikinase [EC:2.7.9.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Selenide, water dikinase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C208_SPHTD
selenide, water dikinase
13_1_20cm_2_scaffold_2206_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15154..16059)
DNA (906bp) protein (302aa)
Transcriptional regulator, LysR family n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLK1_9BACT
LysR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
LysR family transcriptional regulator
13_1_20cm_2_scaffold_2206_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16087..16299)
DNA (213bp) protein (71aa)
Regulatory protein, FmdB family n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QF48_DESB2
FmdB family regulatory protein Tax=GWA2_Rokubacteria_73_35_curated
FmdB family regulatory protein
13_1_20cm_2_scaffold_2206_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16305..16505)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML94_9BACT
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_20cm_2_scaffold_2206_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16599..17750)
DNA (1152bp) protein (384aa)
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13)
2'-deoxycytidine 5'-triphosphate deaminase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PJ22_9BACT
13_1_20cm_2_scaffold_2206_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17747..18667)
DNA (921bp) protein (307aa)
homoserine kinase; K00872 homoserine kinase [EC:2.7.1.39] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Homoserine kinase n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WUS7_KYRT2
homoserine kinase
13_1_20cm_2_scaffold_2206_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18678..19415)
DNA (738bp) protein (246aa)
Cytochrome c biogenesis protein CcdA n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHJ8_9BACT
ccdA; cytochrome c biogenesis protein CcdA Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ccdA; cytochrome c biogenesis protein CcdA
13_1_20cm_2_scaffold_2206_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19418..20059)
DNA (642bp) protein (214aa)
Peroxiredoxin n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3Y7X8_THIV6
resA; thiol-disulfide oxidoreductase ResA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
peroxiredoxin
13_1_20cm_2_scaffold_2206_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20091..21197
DNA (1107bp) protein (369aa)
Type III effector Hrp-dependent outers n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CHU6_THET1
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hrp-dependent type III effector protein
13_1_20cm_2_scaffold_2206_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21194..22219
DNA (1026bp) protein (342aa)
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262); K00097 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TJU5_ALKMQ
13_1_20cm_2_scaffold_2206_22
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22247..24043
DNA (1797bp) protein (599aa)
peptide ABC transporter substrate-binding protein (EC:3.6.3.24)
ABC transporter peptide-binding protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TMZ6_9PROT
peptide ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
13_1_20cm_2_scaffold_2206_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24090..25049
DNA (960bp) protein (320aa)
Oligopeptide ABC transporter substrate-binding protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JBJ2_9PROT
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
binding-protein-dependent transport system inner membrane protein
13_1_20cm_2_scaffold_2206_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

25054..25998
DNA (945bp) protein (315aa)
oppC; peptide ABC transporter membrane protein (EC:3.6.3.24)
Peptide ABC transporter permease protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TMZ4_9PROT rbh
peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_20cm_2_scaffold_2206_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26152..27423
DNA (1272bp) protein (424aa)
amidase; K01426 amidase [EC:3.5.1.4] Tax=GWA2_Rokubacteria_73_35_curated
amidase (EC:3.5.1.4)
Amidase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZG3_RUBXD
Displaying 25 items

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