ggKbase home page

13_1_20cm_2_scaffold_32

Search features with annotation key words

Displaying items 1-30 of 80 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_32_1
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(3..284)
DNA (282bp) protein (94aa)
Ferritin Dps family protein n=1 Tax=Acetobacter sp. CAG:267 RepID=R5YPP8_9PROT
ferritin; K03594 bacterioferritin Tax=CSP1_2_Dadabacteria
ferritin
13_1_20cm_2_scaffold_32_2
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

475..1344
DNA (870bp) protein (290aa)
putative (S)-2,3-Di-O-farnesylgeranylglyceryl synthase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-] Tax=RBG_16_Archaea_50_20_curated
4-hydroxybenzoate octaprenyltransferase (EC:2.5.1.-)
4-hydroxybenzoate octaprenyltransferase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6NA62_9ARCH
13_1_20cm_2_scaffold_32_3
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(1334..2620)
DNA (1287bp) protein (429aa)
hmgA-1; hydroxymethylglutaryl-CoA reductase, degradative (EC:1.1.1.34 1.1.1.88); K00054 hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] Tax=RBG_16_Archaea_50_20_curated
3-hydroxy-3-methylglutaryl-coenzyme A reductase n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BN62_9EURY
3-hydroxy-3-methylglutaryl-coenzyme A reductase
13_1_20cm_2_scaffold_32_4
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(2630..3748)
DNA (1119bp) protein (373aa)
fni; isopentenyl pyrophosphate isomerase (EC:5.3.3.2); K01823 isopentenyl-diphosphate delta-isomerase [EC:5.3.3.2] Tax=RBG_16_Archaea_50_20_curated
fni; Isopentenyl-diphosphate delta-isomerase (EC:5.3.3.2)
Isopentenyl-diphosphate delta-isomerase n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6U101_9EURY rbh
13_1_20cm_2_scaffold_32_5
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(3745..4698)
DNA (954bp) protein (318aa)
mevalonate kinase (EC:2.7.1.36) Tax=RBG_13_Bathyarchaeota_46_16b_curated
Mevalonate kinase n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RYL2_THEPD
mevalonate kinase
13_1_20cm_2_scaffold_32_6
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(4783..5631)
DNA (849bp) protein (283aa)
MEMO1 family protein MK0963 n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Y963_METKA
dioxygenase; K06990 Tax=RBG_13_Bathyarchaeota_46_16b_curated
dioxygenase
13_1_20cm_2_scaffold_32_7
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(5628..6302)
DNA (675bp) protein (225aa)
30S ribosomal protein S2 n=4 Tax=Methanobrevibacter RepID=RS2_METS3
rps2P; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RBG_16_Archaea_50_20_curated
rps2P; 30S ribosomal protein S2
13_1_20cm_2_scaffold_32_8
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists


comp(6550..6966)
DNA (417bp) protein (139aa)
30S ribosomal protein S9 n=1 Tax=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) RepID=RS9_DESK1
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RBG_13_Bathyarchaeota_38_9_curated
rps9p; 30S ribosomal protein S9P
13_1_20cm_2_scaffold_32_9
Thermococcus nautili, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists


comp(6957..7418)
DNA (462bp) protein (154aa)
50S ribosomal protein L13 n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AGB3_PYRYC
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366}; TaxID=195522 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus nautili.;"
Ribosomal protein L13
13_1_20cm_2_scaffold_32_10
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(7415..8050)
DNA (636bp) protein (212aa)
rpoD; DNA-directed RNA polymerase subunit D; K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=RBG_16_Archaea_50_20_curated
RNA polymerase insert n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BB81_9ARCH
RNA polymerase insert
13_1_20cm_2_scaffold_32_11
unknown

Not on your lists

comp(8510..8755)
DNA (246bp) protein (82aa)

This feature has no annotations

13_1_20cm_2_scaffold_32_12
unknown

Not on your lists

comp(8929..9477)
DNA (549bp) protein (183aa)

This feature has no annotations

13_1_20cm_2_scaffold_32_13
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(9522..10208)
DNA (687bp) protein (229aa)
30S ribosomal protein S4 n=1 Tax=Staphylothermus hellenicus (strain DSM 12710 / JCM 10830 / BK20S6-10-b1 / P8) RepID=D7DAE3_STAHD
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S4
13_1_20cm_2_scaffold_32_14
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(10227..10721)
DNA (495bp) protein (165aa)
30S ribosomal protein S13 n=1 Tax=Thermogladius cellulolyticus (strain 1633) RepID=I3TDW4_THEC1
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S13
13_1_20cm_2_scaffold_32_15
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

11109..11531
DNA (423bp) protein (141aa)
S-adenosylmethionine decarboxylase proenzyme; K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50] Tax=CG_Micra_05
S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E0V2_DICTD
S-adenosylmethionine decarboxylase
13_1_20cm_2_scaffold_32_16
unknown

Not on your lists

comp(11641..12156)
DNA (516bp) protein (172aa)

This feature has no annotations

13_1_20cm_2_scaffold_32_17
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

Not on your lists

12314..13207
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI00035E799E
peptidase M50 Tax=RBG_13_Bathyarchaeota_52_12_curated
peptidase M50
13_1_20cm_2_scaffold_32_18
Thermofilum pendens, Thermofilum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(13370..14149)
DNA (780bp) protein (260aa)
Probable tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01081}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01081};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01081}; tRNA pseud
putative rRNA pseudouridine synthase (EC:4.2.1.70)
Probable tRNA pseudouridine synthase B n=3 Tax=Thermofilum RepID=A1RXE0_THEPD
13_1_20cm_2_scaffold_32_19
Staphylothermus hellenicus, Staphylothermus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(14494..14793)
DNA (300bp) protein (100aa)
50S ribosomal protein L14e n=1 Tax=Staphylothermus hellenicus (strain DSM 12710 / JCM 10830 / BK20S6-10-b1 / P8) RepID=D7D9Q9_STAHD
50S ribosomal protein L14e {ECO:0000256|HAMAP-Rule:MF_00721}; TaxID=591019 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Staphylothermus.;" source="Staphylother
50S ribosomal protein L14E/L6E/L27E-like protein
13_1_20cm_2_scaffold_32_20
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(14841..15395)
DNA (555bp) protein (185aa)
cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14] Tax=RBG_16_Archaea_50_20_curated
Cytidylate kinase n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0ECH2_PYRF1
cytidylate kinase
13_1_20cm_2_scaffold_32_21
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(15658..16236)
DNA (579bp) protein (193aa)
Membrane protein-like protein n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CUT5_9ARCH
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_20cm_2_scaffold_32_22
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(16241..16588)
DNA (348bp) protein (116aa)
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] Tax=RBG_16_Archaea_50_20_curated
adkA; adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Aeropyrum camini SY1 = JCM 12091 RepID=U3T9E3_9CREN
13_1_20cm_2_scaffold_32_23
unknown

Not on your lists

16643..16855
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_20cm_2_scaffold_32_24
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(16833..18269)
DNA (1437bp) protein (479aa)
Protein translocase subunit SecY n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7U2G8_9ARCH rbh
hypothetical protein; K10956 protein transport protein SEC61 subunit alpha Tax=RBG_16_Archaea_50_20_curated
preprotein translocase subunit SecY
13_1_20cm_2_scaffold_32_25
Pyrolobus fumarii, Pyrolobus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists


comp(18324..18725)
DNA (402bp) protein (134aa)
50S ribosomal protein L15P n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0ECG7_PYRF1
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=694429 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Pyrodictiaceae; Pyrolobus.;" source="Pyrolobus fumarii (stra
50S ribosomal protein L15P
13_1_20cm_2_scaffold_32_26
unknown

Not on your lists

comp(18859..19089)
DNA (231bp) protein (77aa)

This feature has no annotations

13_1_20cm_2_scaffold_32_27
unknown

Not on your lists

19902..21410
DNA (1509bp) protein (503aa)

This feature has no annotations

13_1_20cm_2_scaffold_32_28
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(21546..21920)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CA88_SPHTD
Uncharacterized protein {ECO:0000313|EMBL:ACZ40731.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" sourc
hypothetical protein
13_1_20cm_2_scaffold_32_29
unknown

Not on your lists

comp(22207..22824)
DNA (618bp) protein (206aa)

This feature has no annotations

13_1_20cm_2_scaffold_32_30
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

22986..23873
DNA (888bp) protein (296aa)
Transcriptional regulator n=1 Tax=Pseudomonas sp. GM50 RepID=J2S625_9PSED
Transcriptional regulator {ECO:0000313|EMBL:AIF84062.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Ni
transcriptional regulator
Displaying items 1-30 of 80 in total

View Taxonomy