ggKbase home page

13_1_20cm_2_scaffold_35

Search features with annotation key words

Displaying items 1-30 of 80 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_35_1
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..378
DNA (378bp) protein (126aa)
Major intrinsic protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JS74_9GAMM
Major intrinsic protein {ECO:0000313|EMBL:AEM47671.1}; Flags: Precursor;; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacil
major intrinsic protein
13_1_20cm_2_scaffold_35_2
Thermoplasmatales archaeon E-plasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

375..797
DNA (423bp) protein (141aa)
arsenate reductase (EC:1.20.4.1)
Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Thermoplasmatales archaeon E-plasma RepID=T0LSN3_9EURY
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:EQB67659.1}; TaxID=667137 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; environmental samples.;" source
13_1_20cm_2_scaffold_35_3
uncultured marine crenarchaeote HF4000_ANIW93E5, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(794..1084)
DNA (291bp) protein (97aa)
Putative translation initiation factor SUI1 n=1 Tax=uncultured marine crenarchaeote HF4000_ANIW93E5 RepID=B3T2R4_9ARCH
Protein translation factor SUI1 homolog {ECO:0000256|PIRNR:PIRNR037511}; TaxID=455563 species="Archaea; Thaumarchaeota; Nitrosopumilales; environmental samples.;" source="uncultured marine crenarchaeo
translation factor SUI1
13_1_20cm_2_scaffold_35_4
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(1108..1437)
DNA (330bp) protein (110aa)
dioxygenase, ferredoxin subunit Tax=CSP1_5_NC10
dioxygenase, ferredoxin subunit
Dioxygenase, ferredoxin subunit alias=gwa2_scaffold_243_138 id=5043255 tax=GW2011_AR10 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae organism_desc=gwa2_.44_58 (temp)
13_1_20cm_2_scaffold_35_5
unknown

Not on your lists

comp(1434..2072)
DNA (639bp) protein (213aa)

This feature has no annotations

13_1_20cm_2_scaffold_35_6
unknown

Not on your lists

comp(2194..2556)
DNA (363bp) protein (121aa)

This feature has no annotations

13_1_20cm_2_scaffold_35_trna_1
unknown

Not on your lists

2756..2861
DNA (106bp)
transferRNA
13_1_20cm_2_scaffold_35_7
Lyngbya aestuarii, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(2909..3484)
DNA (576bp) protein (192aa)
DJ-1/PfpI family protein n=1 Tax=Lyngbya aestuarii BL J RepID=U7QE67_9CYAN
DJ-1/PfpI family protein {ECO:0000313|EMBL:ERT05340.1}; TaxID=1348334 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya aestuarii BL J.;"
ThiJ/PfpI domain-containing protein
13_1_20cm_2_scaffold_35_8
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

3645..4520
DNA (876bp) protein (292aa)
Cation diffusion facilitator family transporter n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMU7_NITGG
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:AIC16983.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;"
cation diffusion facilitator family transporter
13_1_20cm_2_scaffold_35_9
GWB2_Ignavibacteria_35_6b_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(4534..4893)
DNA (360bp) protein (120aa)
putative DNA methylase Tax=GWB2_Ignavibacteria_35_6b_curated
hypothetical protein
mpd:MCP_0966 putative DNA methylase alias=ACD63_133092.6314.5G0005,ACD63_133092.6314.5_5,ACD63_C00105G00005 id=96581 tax=ACD63 species=Methanocella paludicola genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota organism_group=OD1, not OD1-i organism_desc=OD1
13_1_20cm_2_scaffold_35_10
CG_Ignavi_01, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(4877..5290)
DNA (414bp) protein (138aa)
putative DNA methylase Tax=CG_Ignavi_01
DNA modification methylase-like protein alias=RBG9_65_67,RBG9_C00065G00067 id=1247695 tax=RBG9 species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes
hypothetical protein
13_1_20cm_2_scaffold_35_11
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

5406..5675
DNA (270bp) protein (90aa)
rpoH; DNA-directed RNA polymerase subunit H (EC:2.7.7.6) Tax=RBG_16_Bathyarchaeota_48_13_curated
DNA-directed RNA polymerase subunit H n=1 Tax=Desulfurococcus mucosus (strain ATCC 35584 / DSM 2162 / JCM 9187 / O7/1) RepID=E8R7R7_DESM0
DNA-directed RNA polymerase subunit H
13_1_20cm_2_scaffold_35_12
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

5699..8989
DNA (3291bp) protein (1097aa)
rpoB; DNA-directed RNA polymerase subunit B (EC:2.7.7.6) Tax=RBG_16_Archaea_50_20_curated
rpoB; DNA-directed RNA polymerase subunit B (EC:2.7.7.6)
DNA-directed RNA polymerase n=2 Tax=Candidatus Nitrososphaera gargensis RepID=K0ILI7_NITGG
13_1_20cm_2_scaffold_35_13
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

8992..12852
DNA (3861bp) protein (1287aa)
rpoA; DNA-directed RNA polymerase subunit A (EC:2.7.7.6) Tax=RBG_16_Archaea_50_20_curated
rpoA; DNA-directed RNA polymerase subunit A (EC:2.7.7.6)
DNA-directed RNA polymerase n=2 Tax=Candidatus Nitrososphaera gargensis RepID=K0IC33_NITGG
13_1_20cm_2_scaffold_35_14
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists


12857..13156
DNA (300bp) protein (100aa)
50S ribosomal protein L30 n=1 Tax=Methanothermococcus thermolithotrophicus RepID=UPI0003744309
50S ribosomal protein L30; K02908 large subunit ribosomal protein L30e Tax=RBG_13_Bathyarchaeota_46_16b_curated
50S ribosomal protein L30e
13_1_20cm_2_scaffold_35_15
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

13159..13596
DNA (438bp) protein (146aa)
Transcription elongation factor NusA-like protein n=1 Tax=Fervidicoccus fontis (strain DSM 19380 / VKM B-2539 / Kam940) RepID=I0A0T1_FERFK
transcription elongation factor NusA-like protein; K02600 N utilization substance protein A Tax=RBG_16_Archaea_50_20_curated
transcription elongation factor NusA-like protein
13_1_20cm_2_scaffold_35_16
unknown

Not on your lists

13949..14191
DNA (243bp) protein (81aa)

This feature has no annotations

13_1_20cm_2_scaffold_35_17
Streptomyces avermitilis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14275..14676
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) RepID=Q82HI8_STRAW
Uncharacterized protein {ECO:0000313|EMBL:BAC71232.1}; TaxID=227882 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces avermitilis (strain ATC
hypothetical protein
13_1_20cm_2_scaffold_35_18
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(14701..15315)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Clostridium arbusti RepID=UPI00028834A5
hypothetical protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
hypothetical protein
13_1_20cm_2_scaffold_35_19
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(15459..16187)
DNA (729bp) protein (243aa)
Queuosine biosynthesis protein; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] Tax=RBG_16_Euryarchaeota_68_12_curated
Queuosine biosynthesis protein n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CTT7_TRURR
Queuosine biosynthesis protein
13_1_20cm_2_scaffold_35_20
Leptospira broomii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(16184..16753)
DNA (570bp) protein (190aa)
Riboflavin biosynthesis protein RibD C-terminal domain protein n=1 Tax=Leptospira broomii serovar Hurstbridge str. 5399 RepID=T0GLX1_9LEPT
Riboflavin biosynthesis protein RibD C-terminal domain protein {ECO:0000313|EMBL:EQA46363.1}; TaxID=1049789 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptos
bifunctional deaminase-reductase domain-containing protein
13_1_20cm_2_scaffold_35_21
Leptospira broomii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(16746..17318)
DNA (573bp) protein (191aa)
Riboflavin biosynthesis protein RibD C-terminal domain protein n=1 Tax=Leptospira broomii serovar Hurstbridge str. 5399 RepID=T0GHK7_9LEPT
Riboflavin biosynthesis protein RibD C-terminal domain protein {ECO:0000313|EMBL:EQA46334.1}; TaxID=1049789 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptos
deaminase/reductase domain-containing protein
13_1_20cm_2_scaffold_35_22
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(17392..18165)
DNA (774bp) protein (258aa)
N-acetyltransferase n=2 Tax=Chloroflexus RepID=A9WHF1_CHLAA
N-acetyltransferase {ECO:0000313|EMBL:ABY35663.1}; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aur
N-acetyltransferase
13_1_20cm_2_scaffold_35_23
unknown

Not on your lists

comp(18200..18502)
DNA (303bp) protein (101aa)

This feature has no annotations

13_1_20cm_2_scaffold_35_24
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

19006..19530
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=unclassified candidate division pSL4 RepID=UPI00036A5745
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
threonyl/alanyl tRNA synthetase, SAD
13_1_20cm_2_scaffold_35_25
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

19654..19953
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RFB0_ARCPA
Uncharacterized protein {ECO:0000313|EMBL:ADB58804.1}; TaxID=572546 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus profundus (
hypothetical protein
13_1_20cm_2_scaffold_35_26
unknown

Not on your lists

20074..20304
DNA (231bp) protein (77aa)

This feature has no annotations

13_1_20cm_2_scaffold_35_27
RBG_19FT_COMBO_Euryarchaeota_56_21_curated, Euryarchaeota, Archaea

Not on your lists

comp(20403..21653)
DNA (1251bp) protein (417aa)
ATPase (Fragment) n=1 Tax=mine drainage metagenome RepID=T1B1T8_9ZZZZ
RecA-superfamily ATPase possibly involved in signal transduction Tax=RBG_19FT_COMBO_Euryarchaeota_56_21_curated
hypothetical protein
13_1_20cm_2_scaffold_35_28
unknown

Not on your lists

comp(22203..22490)
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_20cm_2_scaffold_35_29
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

22533..23366
DNA (834bp) protein (278aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF84115.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitr
Displaying items 1-30 of 80 in total

View Taxonomy