ggKbase home page

13_1_20cm_2_scaffold_1131

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_1131_1
unknown

Not on your lists

2..142
DNA (141bp) protein (47aa)

This feature has no annotations

13_1_20cm_2_scaffold_1131_2
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(809..1255)
DNA (447bp) protein (149aa)
deoxyuridine 5''''-triphosphate nucleotidohydrolase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002FFE778
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
Tax=BJP_IG2102_Porphyrobacter_62_18
13_1_20cm_2_scaffold_1131_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(1255..2565)
DNA (1311bp) protein (437aa)
pfk; 6-Phosphofructokinase; K00850 6-phosphofructokinase [EC:2.7.1.11] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
6-Phosphofructokinase n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AL84_IGNAJ
pfk; 6-Phosphofructokinase
13_1_20cm_2_scaffold_1131_4
unknown

Not on your lists

comp(2582..3181)
DNA (600bp) protein (200aa)

This feature has no annotations

13_1_20cm_2_scaffold_1131_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3192..4304)
DNA (1113bp) protein (371aa)
alanine dehydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Alanine dehydrogenase n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SHM4_GALCS
alanine dehydrogenase
13_1_20cm_2_scaffold_1131_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(4364..5632)
DNA (1269bp) protein (423aa)
Putative S16B family peptidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y0_GEMAT
putative S16B family peptidase Tax=RBG_16_Gemmatimonadetes_66_8_curated
peptidase M16 domain protein
13_1_20cm_2_scaffold_1131_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5632..6426)
DNA (795bp) protein (265aa)
pnp; polyribonucleotide nucleotidyltransferase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Polyribonucleotide nucleotidyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=PNP_GEMAT
Polyribonucleotide nucleotidyltransferase
13_1_20cm_2_scaffold_1131_8
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

6600..6860
DNA (261bp) protein (87aa)
id=4289048 Tax=RBG_16_NC10_65_8_curated
13_1_20cm_2_scaffold_1131_9
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6861..7490
DNA (630bp) protein (210aa)
hypothetical protein alias=ACD37_C00044G00004,ACD37_417817.2523.4G0004,ACD37_417817.2523.4_4 id=41071 tax=ACD37 species=OP11 genus=unknown taxon_order=unknown taxon_class=unknown phylum=OP11 organism_group=OP11 organism_desc=OP11
hypothetical protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
13_1_20cm_2_scaffold_1131_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


comp(7761..8018)
DNA (258bp) protein (86aa)
30S ribosomal protein S15 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y2_GEMAT
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
rpsO; 30S ribosomal protein S15
13_1_20cm_2_scaffold_1131_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

8087..8950
DNA (864bp) protein (288aa)
putative serine/threonine protein kinase (EC:2.7.11.1) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative serine/threonine protein kinase (EC:2.7.11.1)
Putative serine/threonine protein kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y3_GEMAT
13_1_20cm_2_scaffold_1131_12
unknown

Not on your lists

comp(8942..9325)
DNA (384bp) protein (128aa)

This feature has no annotations

13_1_20cm_2_scaffold_1131_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(9309..10685)
DNA (1377bp) protein (459aa)
membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
peptidase n=1 Tax=Desulfurobacterium sp. TC5-1 RepID=UPI0003B3BB5C
membrane-associated zinc metalloprotease
13_1_20cm_2_scaffold_1131_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10676..11812)
DNA (1137bp) protein (379aa)
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RBG_16_Gemmatimonadetes_66_8_curated
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y7_GEMAT
13_1_20cm_2_scaffold_1131_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11809..12660)
DNA (852bp) protein (284aa)
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41); K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Phosphatidate cytidylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y8_GEMAT
phosphatidate cytidylyltransferase
13_1_20cm_2_scaffold_1131_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(12660..13400)
DNA (741bp) protein (247aa)
uppS; UDP pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Isoprenyl transferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y9_GEMAT
Undecaprenyl pyrophosphate synthase
13_1_20cm_2_scaffold_1131_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(13402..13965)
DNA (564bp) protein (188aa)
Ribosome-recycling factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Z0_GEMAT
frr; ribosome recycling factor; K02838 ribosome recycling factor Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Ribosome-recycling factor
13_1_20cm_2_scaffold_1131_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13962..14702)
DNA (741bp) protein (247aa)
pyrH; uridylate kinase (EC:2.7.4.22); K09903 uridylate kinase [EC:2.7.4.22] Tax=RBG_16_Gemmatimonadetes_66_8_curated
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Z1_GEMAT rbh
13_1_20cm_2_scaffold_1131_19
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(14703..15311)
DNA (609bp) protein (203aa)
Elongation factor Ts n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SJQ4_THEM7
translation elongation factor Ts (EF-Ts); K02357 elongation factor Ts Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
translation elongation factor Ts (EF-Ts)
13_1_20cm_2_scaffold_1131_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


comp(15402..16283)
DNA (882bp) protein (294aa)
30S ribosomal protein S2 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Z3_GEMAT
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ribosomal protein S2
13_1_20cm_2_scaffold_1131_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(16477..16743)
DNA (267bp) protein (89aa)
30S ribosomal protein S9 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RS9_GEMAT
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rpsI; 30S ribosomal protein S9
13_1_20cm_2_scaffold_1131_22
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists


comp(16740..17183)
DNA (444bp) protein (148aa)
50S ribosomal protein L13 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RL13_GEMAT
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
rplM; 50S ribosomal protein L13
13_1_20cm_2_scaffold_1131_23
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(17254..17772)
DNA (519bp) protein (173aa)
Biotin carboxyl carrier protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Z7_GEMAT
Biotin carboxyl carrier protein {ECO:0000313|EMBL:BAH38822.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (s
biotin carboxyl carrier protein
13_1_20cm_2_scaffold_1131_24
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(17897..19168)
DNA (1272bp) protein (424aa)
hypothetical protein; K00599 [EC:2.1.1.-] Tax=GWC2_Gemmatimonadetes_71_10_curated
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Z8_GEMAT
(Uracil-5)-methyltransferase
13_1_20cm_2_scaffold_1131_25
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(19165..20685)
DNA (1521bp) protein (507aa)
acyl-CoA carboxylase alpha chain (EC:6.4.1.-) Tax=GWC2_Gemmatimonadetes_71_10_curated
acyl-CoA carboxylase alpha chain (EC:6.4.1.-)
Acyl-CoA carboxylase alpha chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Z9_GEMAT
13_1_20cm_2_scaffold_1131_26
unknown

Not on your lists

comp(20726..21688)
DNA (963bp) protein (321aa)

This feature has no annotations

13_1_20cm_2_scaffold_1131_27
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(21669..23195)
DNA (1527bp) protein (509aa)
acyl-CoA carboxylase beta chain (EC:6.4.1.-); K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Acyl-CoA carboxylase beta chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A400_GEMAT
carboxyl transferase
13_1_20cm_2_scaffold_1131_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


comp(23313..25028)
DNA (1716bp) protein (572aa)
30S ribosomal protein S1 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A406_GEMAT
rpsA; 30S ribosomal protein S1; K02945 small subunit ribosomal protein S1 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
RNA binding S1 domain protein
13_1_20cm_2_scaffold_1131_29
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25100..25801)
DNA (702bp) protein (234aa)
cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
bifunctional pantoate ligase/cytidylate kinase n=1 Tax=Synechococcus sp. CB0205 RepID=UPI0002002F6C
Cytidylate kinase
13_1_20cm_2_scaffold_1131_30
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(25798..27081)
DNA (1284bp) protein (428aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] Tax=RBG_16_Gemmatimonadetes_66_8_curated
cyclohexadienyl dehydrogenase n=1 Tax=Pseudomonas putida RepID=UPI000317DDC6
3-phosphoshikimate 1-carboxyvinyltransferase
Displaying items 1-30 of 31 in total

View Taxonomy