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13_1_20cm_2_scaffold_1195

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_1195_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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1..213
DNA (213bp) protein (71aa)
Elongation factor Ts n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NQK0_MARHT
translation elongation factor Ts (EF-Ts); K02357 elongation factor Ts Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
elongation factor Ts
13_1_20cm_2_scaffold_1195_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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214..930
DNA (717bp) protein (239aa)
pyrH; uridylate kinase (EC:2.7.4.22); K09903 uridylate kinase [EC:2.7.4.22] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Uridylate kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Z1_GEMAT
Uridylate kinase
13_1_20cm_2_scaffold_1195_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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927..1496
DNA (570bp) protein (190aa)
Ribosome-recycling factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Z0_GEMAT
frr; ribosome recycling factor; K02838 ribosome recycling factor Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Ribosome-recycling factor
13_1_20cm_2_scaffold_1195_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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1496..2212
DNA (717bp) protein (239aa)
uppS; UDP pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Isoprenyl transferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y9_GEMAT
Undecaprenyl pyrophosphate synthase
13_1_20cm_2_scaffold_1195_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

2212..3069
DNA (858bp) protein (286aa)
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41); K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y8_GEMAT
13_1_20cm_2_scaffold_1195_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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3066..4199
DNA (1134bp) protein (378aa)
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y7_GEMAT
13_1_20cm_2_scaffold_1195_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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4190..5542
DNA (1353bp) protein (451aa)
membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
RIP metalloprotease RseP n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YCF2_THIV6
RIP metalloprotease RseP
13_1_20cm_2_scaffold_1195_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(5875..6864)
DNA (990bp) protein (330aa)
putative serine/threonine protein kinase (EC:2.7.11.1) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative serine/threonine protein kinase (EC:2.7.11.1)
Putative serine/threonine protein kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y3_GEMAT
13_1_20cm_2_scaffold_1195_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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6944..7129
DNA (186bp) protein (62aa)
30S ribosomal protein S15 n=1 Tax=Sutterella parvirubra YIT 11816 RepID=H3KFK0_9BURK
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ribosomal protein S15
13_1_20cm_2_scaffold_1195_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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7307..9298
DNA (1992bp) protein (664aa)
pnp; polyribonucleotide nucleotidyltransferase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Polyribonucleotide nucleotidyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=PNP_GEMAT
Polyribonucleotide nucleotidyltransferase
13_1_20cm_2_scaffold_1195_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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9300..10586
DNA (1287bp) protein (429aa)
Putative S16B family peptidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Y0_GEMAT
putative S16B family peptidase Tax=RBG_16_Gemmatimonadetes_66_8_curated
peptidase M16 domain protein
13_1_20cm_2_scaffold_1195_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

10583..11695
DNA (1113bp) protein (371aa)
alanine dehydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Alanine dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3X9_GEMAT
alanine dehydrogenase
13_1_20cm_2_scaffold_1195_13
unknown

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11704..12267
DNA (564bp) protein (188aa)

This feature has no annotations

13_1_20cm_2_scaffold_1195_14
GWF2_Lentisphaerae_52_8_curated, Lentisphaerae, Bacteria

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12302..12781
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y2X8_PEDHD
hypothetical protein; K09924 hypothetical protein Tax=GWF2_Lentisphaerae_52_8_curated
hypothetical protein
13_1_20cm_2_scaffold_1195_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

12781..14040
DNA (1260bp) protein (420aa)
Eukaryotic-type DNA primase-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XWZ9_RAMTT
eukaryotic-type DNA primase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
eukaryotic-type DNA primase
13_1_20cm_2_scaffold_1195_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(13994..15091)
DNA (1098bp) protein (366aa)
ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
ATP-dependent DNA ligase-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XX07_RAMTT
ATP-dependent DNA ligase
13_1_20cm_2_scaffold_1195_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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15150..15743
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4U4_GEMAT
Uncharacterized protein {ECO:0000313|EMBL:AHG88204.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
protein of unknown function DUF305
13_1_20cm_2_scaffold_1195_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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15740..17755
DNA (2016bp) protein (672aa)
hypothetical protein n=1 Tax=Balneola vulgaris RepID=UPI0003692E5E
LVIVD repeat-containing protein {ECO:0000313|EMBL:AHG91658.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
LVIVD repeat-containing protein
13_1_20cm_2_scaffold_1195_19
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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17763..19646
DNA (1884bp) protein (628aa)
putative ABC transporter ATP-binding/permease protein; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Putative ABC transporter ATP-binding/permease protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5F7_GEMAT
ABC transporter transmembrane region
13_1_20cm_2_scaffold_1195_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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19646..20899
DNA (1254bp) protein (418aa)
Ankyrin n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJ58_NIAKG
Ankyrin {ECO:0000313|EMBL:AEV98591.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620
ankyrin
13_1_20cm_2_scaffold_1195_21
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20916..21395
DNA (480bp) protein (160aa)
AhpC/TSA family protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I1A0_AZOC5
AhpC/TSA family protein {ECO:0000313|EMBL:BAF87348.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulino
AhpC/TSA family protein
13_1_20cm_2_scaffold_1195_22
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

21444..21698
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNL2_OPITP
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein
Displaying 22 items

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