ggKbase home page

13_1_20cm_2_scaffold_227

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_227_1
Hyperthermus butylicus, Hyperthermus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(1..1527)
DNA (1527bp) protein (509aa)
UPF0273 protein Hbut_0418 n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=A2BJX3_HYPBU
UPF0273 protein Hbut_0418 {ECO:0000256|HAMAP-Rule:MF_01076}; TaxID=415426 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Pyrodictiaceae; Hyperthermus.;" source="Hyperthermus butylic
hypothetical protein
13_1_20cm_2_scaffold_227_2
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

2177..2677
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI0003643B83
Strain A contig00006, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ55671.1}; TaxID=277 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiotherm
hypothetical protein
13_1_20cm_2_scaffold_227_3
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

2966..3511
DNA (546bp) protein (182aa)
Putative HEAT repeat-containing PBS lyase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKC1_NITGG
HEAT repeat-containing PBS lyase Tax=RBG_16_Archaea_50_20_curated
putative HEAT repeat-containing PBS lyase
13_1_20cm_2_scaffold_227_4
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

3570..4631
DNA (1062bp) protein (354aa)
hypothetical protein; K15429 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RBG_13_Bathyarchaeota_46_16b_curated
Met-10+ like protein n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AF65_PYRYC
hypothetical protein
13_1_20cm_2_scaffold_227_5
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(4628..5047)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GY02_METFV
hypothetical protein Tax=RBG_16_Bathyarchaeota_48_13_curated
hypothetical protein
13_1_20cm_2_scaffold_227_6
Ignicoccus hospitalis, Ignicoccus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

5153..5323
DNA (171bp) protein (57aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000255|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000255|HAMAP-Rule:M
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) RepID=PIMT_IGNH4
protein-L-isoaspartate O-methyltransferase
13_1_20cm_2_scaffold_227_7
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5351..5806
DNA (456bp) protein (152aa)
Protein-L-isoaspartate O-methyltransferase 1; EC=2.1.1.77;; L-isoaspartyl protein carboxyl methyltransferase 1; Protein L-isoaspartyl methyltransferase 1; Protein-beta-aspartate methyltransferase 1; S
Protein-L-isoaspartate O-methyltransferase 1 n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=PIMT1_METAC
pcm-1; protein-L-isoaspartate O-methyltransferase
13_1_20cm_2_scaffold_227_8
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(5803..6840)
DNA (1038bp) protein (346aa)
flap endonuclease-1; K04799 flap endonuclease-1 [EC:3.-.-.-] Tax=RBG_16_Archaea_50_20_curated
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI00037087F5
endonuclease
13_1_20cm_2_scaffold_227_9
Candidatus Korarchaeum cryptofilum, Candidatus Korarchaeum, Korarchaeota, Archaea

Not on your lists

comp(6869..7639)
DNA (771bp) protein (257aa)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L453_KORCO
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase {ECO:0000313|EMBL:ACB07232.1}; TaxID=374847 species="Archaea; Korarchaeota; Candidatus Korarchaeum.;" source="Korarchaeum cryptof
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
13_1_20cm_2_scaffold_227_10
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

Not on your lists

7701..8582
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z8I7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCQ89344.1}; TaxID=1266370 species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina.;" source="Nitrospina gracilis (strain 3/211
adenine nucleotide alpha hydrolase TIGR00268 family
13_1_20cm_2_scaffold_227_11
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

8786..9385
DNA (600bp) protein (200aa)
proteasome subunit beta (EC:3.4.25.1); K03433 proteasome beta subunit [EC:3.4.25.1] Tax=RBG_16_Archaea_50_20_curated
psmB2; proteasome, subunit beta (EC:3.4.25.1)
Proteasome subunit beta n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GY12_METFV
13_1_20cm_2_scaffold_227_12
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

9452..11350
DNA (1899bp) protein (633aa)
Putative uncharacterized protein PH1404 n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=O50112_PYRHO
kh-domain/beta-lactamase-domain protein; K07041 Tax=RBG_13_Bathyarchaeota_38_9_curated
mRNA 3'-end processing factor
13_1_20cm_2_scaffold_227_13
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(11363..11755)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=uncultured archaeon RepID=G3C9I1_9ARCH
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
Protein of unknown function (DUF552)
13_1_20cm_2_scaffold_227_14
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(11783..12286)
DNA (504bp) protein (168aa)
PUA domain containing protein n=1 Tax=Methanococcus voltae (strain ATCC BAA-1334 / A3) RepID=D7DV72_METV3
putative RNA-binding protein; K07575 PUA domain protein Tax=RBG_16_Archaea_50_20_curated
PUA domain-containing protein
13_1_20cm_2_scaffold_227_15
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

12368..12598
DNA (231bp) protein (77aa)
Small nuclear ribonucleoprotein n=1 Tax=Cenarchaeum symbiosum (strain A) RepID=A0RZA4_CENSY
small nuclear ribonucleoprotein Tax=RBG_13_Bathyarchaeota_38_9_curated
small nuclear ribonucleoprotein
13_1_20cm_2_scaffold_227_16
unknown

Not on your lists

12921..15539
DNA (2619bp) protein (873aa)

This feature has no annotations

13_1_20cm_2_scaffold_227_17
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


15726..17600
DNA (1875bp) protein (625aa)
glycyl-tRNA synthetase; K01880 glycyl-tRNA synthetase [EC:6.1.1.14] Tax=RBG_16_Archaea_50_20_curated
Glycine--tRNA ligase n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0ECJ1_PYRF1 rbh
glycyl-tRNA synthetase
13_1_20cm_2_scaffold_227_18
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

17668..18327
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8B5_9ARCH
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_20cm_2_scaffold_227_19
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

18335..18904
DNA (570bp) protein (190aa)
endA1; tRNA-splicing endonuclease (EC:3.1.27.9) Tax=RBG_16_Archaea_50_20_curated
endA2; tRNA-splicing endonuclease (EC:4.6.1.16)
tRNA intron endonuclease n=1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KJR1_9ARCH
13_1_20cm_2_scaffold_227_20
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

comp(18914..19249)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI000380515C
hypothetical protein
Tax=RBG_16_Thaumarchaeota_49_8_curated
13_1_20cm_2_scaffold_227_21
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

19413..19916
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Methanothermobacter thermautotrophicus CaT2 RepID=T2GJY7_METTF
amino acid-binding ACT domain-containing protein; K07103 Tax=RBG_13_Bathyarchaeota_38_9_curated
regulatory protein
13_1_20cm_2_scaffold_227_22
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

19998..20744
DNA (747bp) protein (249aa)
Tax=RBG_16_Archaea_50_20_curated
13_1_20cm_2_scaffold_227_23
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

20762..21268
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Aigarchaeota archaeon SCGC AAA471-G05 RepID=UPI00037F1D50
hsp20; heat shock protein Hsp20 Tax=RBG_13_Bathyarchaeota_38_9_curated
hsp20-4; heat shock protein Hsp20
13_1_20cm_2_scaffold_227_24
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

Not on your lists

21412..22614
DNA (1203bp) protein (401aa)
Peptidase M24 n=1 Tax=Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017) RepID=E1QPW0_VULDI
peptidase M24 Tax=RBG_13_Bathyarchaeota_52_12_curated
peptidase M24
13_1_20cm_2_scaffold_227_25
unknown

Not on your lists

22688..22969
DNA (282bp) protein (94aa)

This feature has no annotations

13_1_20cm_2_scaffold_227_26
unknown

Not on your lists

comp(23058..23249)
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_20cm_2_scaffold_227_27
Lachnoanaerobaculum sp. OBRC5-5, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23333..24493)
DNA (1161bp) protein (387aa)
butyryl-CoA dehydrogenase (EC:1.3.99.3)
acyl-CoA dehydrogenase n=1 Tax=Oceanobacillus sp. Ndiop RepID=UPI000288716E
Uncharacterized protein {ECO:0000313|EMBL:EJZ70800.1}; TaxID=936595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum sp. OB
13_1_20cm_2_scaffold_227_28
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(24551..26134)
DNA (1584bp) protein (528aa)
UPF0219 protein Mfer_0083 n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GWZ8_METFV
hydroxymethylglutaryl-CoA synthase Tax=RBG_13_Bathyarchaeota_38_9_curated
hydroxymethylglutaryl-CoA synthase
13_1_20cm_2_scaffold_227_29

Not on your lists

26393..28144
DNA (1752bp) protein (584aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM74115.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative protease alias=gwe2_scaffold_136_326 id=1799433 tax=TA06 species=Hydrogenivirga sp. 128-5-R1-1 genus=Hydrogenivirga taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae
M6 family metalloprotease domain-containing protein
13_1_20cm_2_scaffold_227_30
unknown

Not on your lists

comp(28076..28621)
DNA (546bp) protein (182aa)

This feature has no annotations

Displaying items 1-30 of 38 in total

View Taxonomy