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13_1_20cm_2_scaffold_2529

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_2529_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..1065
DNA (1065bp) protein (355aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_2_scaffold_2529_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1076..2143)
DNA (1068bp) protein (356aa)
Response regulator n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PCC1_9DELT
response regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
response regulator
13_1_20cm_2_scaffold_2529_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2145..2633)
DNA (489bp) protein (163aa)
Response regulator receiver modulated diguanylate cyclase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XRD2_9BACT
diguanylate cyclase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
diguanylate cyclase
13_1_20cm_2_scaffold_2529_4
unknown

Not on your lists

2669..2830
DNA (162bp) protein (54aa)

This feature has no annotations

13_1_20cm_2_scaffold_2529_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3111..3347
DNA (237bp) protein (79aa)
SirA family protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WTQ4_ALIAD
SirA family protein Tax=GWA2_Rokubacteria_73_35_curated
SirA family protein
13_1_20cm_2_scaffold_2529_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3307..4518
DNA (1212bp) protein (404aa)
class V aminotransferase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
class V aminotransferase (EC:2.8.1.7)
Aminotransferase class V n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SLB1_THEM7
13_1_20cm_2_scaffold_2529_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4520..5212
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034C0CA3
gph; phosphoglycolate phosphatase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_20cm_2_scaffold_2529_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5209..5664
DNA (456bp) protein (152aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_20cm_2_scaffold_2529_9
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5830..6243)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z1I7_9RHIZ
hypothetical protein Tax=RBG_13_Deltaproteobacteria_52_11_curated
hypothetical protein
13_1_20cm_2_scaffold_2529_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6397..7041)
DNA (645bp) protein (215aa)
NADPH-dependent F420 reductase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EYE1_SPHCR
NADPH-dependent F420 reductase; K06988 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADPH-dependent F420 reductase
13_1_20cm_2_scaffold_2529_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7050..7796)
DNA (747bp) protein (249aa)
coenzyme F420-0 gamma-glutamyl ligase; K12234 coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
F420-dependent oxidoreductase, putative n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NR14_ROSCS
F420-dependent oxidoreductase
13_1_20cm_2_scaffold_2529_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7978..8667)
DNA (690bp) protein (230aa)
2-phospho-L-lactate guanylyltransferase CofC; K14941 2-phospho-L-lactate guanylyltransferase [EC:2.7.7.68] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Hypothetical conserved protein n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SDD2_9BACT
2-phospho-L-lactate guanylyltransferase CofC
13_1_20cm_2_scaffold_2529_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8664..9587)
DNA (924bp) protein (308aa)
LPPG:FO 2-phospho-L-lactate transferase; K11212 LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28] Tax=GWA2_Rokubacteria_73_35_curated
LPPG:FO 2-phospho-L-lactate transferase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SDD1_9BACT
LPPG domain-containing protein containing protein
13_1_20cm_2_scaffold_2529_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9589..10131)
DNA (543bp) protein (181aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_20cm_2_scaffold_2529_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(10118..10411)
DNA (294bp) protein (98aa)
Transcriptional dual regulator HU-beta n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P884_9BACT
hupB; transcriptional dual regulator HU-beta; K03530 DNA-binding protein HU-beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hupB; transcriptional dual regulator HU-beta
13_1_20cm_2_scaffold_2529_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10485..11750)
DNA (1266bp) protein (422aa)
cofH; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase (EC:2.5.1.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
cofH; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase (EC:2.5.1.-)
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L535_THERP
13_1_20cm_2_scaffold_2529_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11728..12870)
DNA (1143bp) protein (381aa)
cofG; FO synthase subunit 1; K11779 FO synthase [EC:2.5.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EHA9_9CHLR
cofG; FO synthase subunit 1
13_1_20cm_2_scaffold_2529_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12867..13877)
DNA (1011bp) protein (337aa)
Coenzyme f420-dependent n5,n10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases n=1 Tax=uncultured Chloroflexi bacterium HF0200_06I16 RepID=E0XTZ6_9CHLR
luciferase-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
luciferase family protein
13_1_20cm_2_scaffold_2529_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13942..15756
DNA (1815bp) protein (605aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=2 Tax=Geobacter sulfurreducens RepID=MNMG_GEOSL
gidA; tRNA (5-carboxymethylaminomethyl-2-thio-U34)-formylglycinetransferase/reductase; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_cur
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
13_1_20cm_2_scaffold_2529_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15812..16285
DNA (474bp) protein (158aa)
thioesterase superfamily protein; K02614 acyl-CoA thioesterase [EC:3.1.2.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Phenylacetic acid degradation-related protein n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KK47_9GAMM
thioesterase superfamily protein
13_1_20cm_2_scaffold_2529_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16293..17687
DNA (1395bp) protein (465aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z4J8_DESAT
putative two-component histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
integral membrane sensor signal transduction histidine kinase
13_1_20cm_2_scaffold_2529_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17684..18079
DNA (396bp) protein (132aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_20cm_2_scaffold_2529_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18076..19599
DNA (1524bp) protein (508aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B3V9_HERA2
signal transduction histidine kinase NtrB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
multi-sensor signal transduction histidine kinase
13_1_20cm_2_scaffold_2529_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19820..21208
DNA (1389bp) protein (463aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU93_9BACT
two component, sigma54 specific, transcriptional regulator, Fis family; K07714 two-component system, NtrC family, response regulator AtoC Tax=GWA2_Rokubacteria_73_35_curated
two component, sigma54 specific, transcriptional regulator, Fis family
13_1_20cm_2_scaffold_2529_25
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

21425..22777
DNA (1353bp) protein (451aa)
Carbohydrate-binding protein, putative n=1 Tax=Phytophthora infestans (strain T30-4) RepID=D0MZC7_PHYIT
Uncharacterized protein {ECO:0000313|EMBL:AIE86181.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsen
hypothetical protein
13_1_20cm_2_scaffold_2529_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22896..23234
DNA (339bp) protein (113aa)
Nitrogen regulatory protein PII n=1 Tax=Novosphingobium sp. AP12 RepID=J3A0U7_9SPHN
nitrogen regulatory protein PII; K04751 nitrogen regulatory protein P-II 1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
nitrogen regulatory protein P-II
13_1_20cm_2_scaffold_2529_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23286..24770
DNA (1485bp) protein (495aa)
Ammonium transport protein (Amt family) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG60_9BACT
amtB; ammonium transport protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
amtB; ammonium transport protein
Displaying 27 items

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