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13_1_20cm_2_scaffold_4390

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_4390_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1..834
DNA (834bp) protein (278aa)
ComE-like competence protein n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67S85_SYMTH alias=16ft_combo_ws3_scaffold_92_76 id=5225852 tax=16ft_combo_ws3 species=Symbiobacterium thermophilum (strain T / IAM 14863) genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes
ComE-like competence protein; K02238 competence protein ComEC Tax=GWA2_Rokubacteria_73_35_curated
ComEC/Rec2-like protein
13_1_20cm_2_scaffold_4390_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

846..2081
DNA (1236bp) protein (412aa)
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83); K10206 LL-diaminopimelate aminotransferase [EC:2.6.1.83] Tax=GWA2_Rokubacteria_73_35_curated
dapL1; LL-diaminopimelate aminotransferase DapL (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VMI1_CLOSH
13_1_20cm_2_scaffold_4390_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2085..3077)
DNA (993bp) protein (331aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=GWA2_Rokubacteria_73_35_curated
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY0_9BACT
13_1_20cm_2_scaffold_4390_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3159..4175
DNA (1017bp) protein (339aa)
Aminodeoxychorismate lyase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MH77_9BACT
aminodeoxychorismate lyase; K07082 UPF0755 protein Tax=GWA2_Rokubacteria_73_35_curated
aminodeoxychorismate lyase
13_1_20cm_2_scaffold_4390_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4197..4868
DNA (672bp) protein (224aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RDD8_AMMDK
1-acyl-sn-glycerol-3-phosphate acyltransferase Tax=GWA2_Rokubacteria_73_35_curated
1-acyl-sn-glycerol-3-phosphate acyltransferase
13_1_20cm_2_scaffold_4390_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4865..6295
DNA (1431bp) protein (477aa)
argininosuccinate lyase; K01755 argininosuccinate lyase [EC:4.3.2.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Argininosuccinate lyase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=ARLY_SYMTH
argininosuccinate lyase
13_1_20cm_2_scaffold_4390_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6292..7371
DNA (1080bp) protein (360aa)
Putative Fibronectin, type III n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHS2_9BACT
Fibronectin, type III Tax=GWA2_Rokubacteria_73_35_curated
Fibronectin, type III
13_1_20cm_2_scaffold_4390_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7407..8657
DNA (1251bp) protein (417aa)
lysA; diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=GWA2_Rokubacteria_73_35_curated
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAK4_9BACT
13_1_20cm_2_scaffold_4390_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8773..9393
DNA (621bp) protein (207aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dapA; dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIK9_9BACT
13_1_20cm_2_scaffold_4390_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9485..10342
DNA (858bp) protein (286aa)
dapB; dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26] Tax=GWA2_Rokubacteria_73_35_curated
dapB; dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAK6_9BACT
13_1_20cm_2_scaffold_4390_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10350..11105
DNA (756bp) protein (252aa)
ureidoglycolate lyase (EC:4.3.2.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase n=1 Tax=Streptomycetaceae bacterium MP113-05 RepID=V6L4N9_9ACTO
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
13_1_20cm_2_scaffold_4390_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11105..11467
DNA (363bp) protein (121aa)
folB; dihydroneopterin aldolase (DHNA) (EC:4.1.2.25) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein n=1 Tax=WS1 bacterium JGI 0000059-K21 RepID=UPI00037AAE5C
dihydroneopterin aldolase
13_1_20cm_2_scaffold_4390_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11464..12012
DNA (549bp) protein (183aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AG5_SOLUE
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_20cm_2_scaffold_4390_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12021..12533
DNA (513bp) protein (171aa)
RNA polymerase n=1 Tax=Citricoccus sp. CH26A RepID=UPI000255DEF6
ECF subfamily RNA polymerase sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ECF subfamily RNA polymerase sigma-24
13_1_20cm_2_scaffold_4390_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12530..13237
DNA (708bp) protein (236aa)
id=14627111 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_20cm_2_scaffold_4390_16
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13387..13749)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000374A746
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
hypothetical protein
13_1_20cm_2_scaffold_4390_17
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13808..14629)
DNA (822bp) protein (274aa)
Alpha/beta hydrolase fold protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G738_GEOUR
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ABQ27606.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter
alpha/beta hydrolase fold protein
13_1_20cm_2_scaffold_4390_18
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14647..15264)
DNA (618bp) protein (206aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0CHA1_ALCDB
oxidoreductase Tax=RBG_13_Deltaproteobacteria_47_9_curated
oxidoreductase
Displaying 18 items

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